Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.0e-138 495.0 290 100.0
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-111 406.8 289 87.2
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.6e-107 393.3 248 97.2
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-95 353.2 228 96.9
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-95 353.2 228 96.9
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 9.7e-92 340.9 226 82.7
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.8e-91 338.6 252 75.4
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 1.8e-90 336.7 228 92.1
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 3.1e-90 335.9 226 81.4
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.0e-89 333.2 236 77.5
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 5.9e-89 331.6 226 80.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.5e-87 325.1 226 79.2
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.0e-80 302.0 212 80.7
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.2e-78 297.4 226 73.0
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 6.1e-78 295.0 227 71.4
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 8.8e-77 291.2 226 71.2
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 3.7e-67 259.2 273 58.2
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 4.8e-67 258.8 226 62.4
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 7.7e-65 251.5 226 65.0
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 1.3e-64 250.8 227 60.4
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 7.2e-63 245.0 227 60.4
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.6e-62 242.7 227 59.0
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 3.6e-62 242.7 228 61.4
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 1.0e-61 241.1 227 68.3
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 1.5e-60 237.3 229 59.8
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.6e-60 236.5 227 58.1
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 7.5e-60 235.0 225 57.8
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.3e-59 234.2 227 69.6
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 3.7e-59 232.6 227 59.5
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 3.7e-59 232.6 226 59.3
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.7e-59 232.6 230 56.1
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.9e-59 232.3 228 57.5
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.4e-58 230.7 227 58.1
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 2.4e-58 229.9 227 59.5
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.4e-58 229.9 222 56.8
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 2.4e-58 229.9 226 56.6
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.4e-58 229.9 227 59.0
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 3.1e-58 229.6 228 55.7
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 3.1e-58 229.6 226 57.5
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 4.1e-58 229.2 230 56.5
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 5.4e-58 228.8 255 55.3
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 5.4e-58 228.8 227 69.2
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 9.2e-58 228.0 229 56.3
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.2e-57 227.6 222 56.3
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.6e-57 227.3 229 56.8
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.6e-57 227.3 227 59.5
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.0e-57 226.9 228 57.0
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 2.7e-57 226.5 227 58.1
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.7e-57 226.5 227 57.3
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.9e-57 225.3 256 53.9
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 7.8e-57 224.9 227 56.4
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 1.7e-56 223.8 227 56.8
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 2.9e-56 223.0 231 57.1
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 3.8e-56 222.6 231 57.6
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 5.0e-56 222.2 234 54.7
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 8.6e-56 221.5 226 57.5
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 8.6e-56 221.5 227 56.8
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.1e-55 221.1 226 57.1
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.1e-55 221.1 231 56.7
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.5e-55 220.7 229 57.6
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.9e-55 220.3 229 57.6
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.9e-55 220.3 228 56.6
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 1.9e-55 220.3 226 55.3
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 3.3e-55 219.5 227 62.6
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 4.3e-55 219.2 229 57.2
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 7.3e-55 218.4 227 55.5
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 9.5e-55 218.0 228 56.1
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 9.5e-55 218.0 236 55.5
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 1.6e-54 217.2 245 54.7
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.7e-54 215.7 230 56.1
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 4.7e-54 215.7 228 54.4
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 4.7e-54 215.7 227 55.5
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 6.1e-54 215.3 173 70.5
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 1.4e-53 214.2 226 65.9
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.8e-53 213.8 229 54.6
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.8e-53 213.8 227 55.9
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.8e-53 213.8 226 52.7
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 4.0e-53 212.6 226 53.5
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.0e-53 212.6 227 55.5
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 5.2e-53 212.2 228 58.3
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 8.9e-53 211.5 228 57.9
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.2e-52 211.1 229 54.6
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.2e-52 211.1 227 54.6
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.5e-52 210.7 227 54.6
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.5e-52 210.7 228 57.9
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.0e-52 210.3 226 56.2
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.0e-52 210.3 228 55.7
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.6e-52 209.9 227 53.3
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.4e-52 209.1 227 55.9
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.4e-52 209.1 227 55.9
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.7e-52 208.8 228 53.1
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 5.7e-52 208.8 228 55.7
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 7.5e-52 208.4 229 55.0
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.2e-51 206.8 226 53.1
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-51 206.8 225 52.9
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 2.2e-51 206.8 229 53.3
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.3e-51 204.9 229 63.3
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.1e-50 204.5 226 52.7
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.4e-50 204.1 228 55.7
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 3.2e-50 203.0 227 51.5
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 4.1e-50 202.6 226 54.0
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 9.2e-50 201.4 238 52.5
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 1.6e-49 200.7 224 54.0
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.7e-49 199.9 229 52.0
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 3.5e-49 199.5 227 52.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 3.5e-49 199.5 227 52.4
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 4.6e-49 199.1 229 51.5
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 5.9e-49 198.7 226 53.5
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 3.0e-48 196.4 173 64.7
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 3.0e-48 196.4 226 51.8
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 5.0e-48 195.7 224 53.1
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 5.0e-48 195.7 226 54.4
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 8.6e-48 194.9 232 51.3
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 1.1e-47 194.5 241 48.5
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.9e-47 193.7 225 49.8
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 4.3e-47 192.6 227 51.5
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 7.3e-47 191.8 313 45.7
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 2.1e-46 190.3 226 49.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 2.8e-46 189.9 228 50.9
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 3.6e-46 189.5 269 48.7
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 6.2e-46 188.7 199 54.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 6.2e-46 188.7 227 51.5
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.0e-46 188.3 272 52.9
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 8.0e-46 188.3 241 48.5
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 8.0e-46 188.3 226 51.8
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.3e-45 186.8 171 64.9
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 8.9e-45 184.9 172 63.4
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 3.4e-44 183.0 226 58.8
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 9.8e-44 181.4 226 48.7
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-42 177.9 171 59.6
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.4e-42 176.8 198 51.5
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 5.4e-42 175.6 205 60.0
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.2e-42 174.9 169 58.0
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 2.7e-41 173.3 237 48.1
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 3.5e-41 172.9 201 49.8
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.8e-41 171.8 184 56.0
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 5.0e-40 169.1 170 58.2
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.8e-38 163.3 226 44.7
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 3.6e-38 162.9 199 48.7
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 3.6e-38 162.9 262 42.4
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 8.1e-38 161.8 197 48.2
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.3e-37 160.2 226 44.7
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 2.3e-37 160.2 143 60.1
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.5e-36 157.5 172 54.1
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.0e-36 157.1 184 50.5
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 2.0e-36 157.1 207 47.3
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 5.8e-36 155.6 226 44.2
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 3.7e-35 152.9 171 57.9
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 6.4e-35 152.1 181 51.9
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.1e-34 149.4 177 50.3
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.2e-34 148.3 182 49.5
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 3.5e-33 146.4 155 52.9
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.9e-32 142.9 189 46.0
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.9e-32 142.9 189 46.6
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 6.8e-29 132.1 255 35.7
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 4.9e-27 125.9 161 50.3
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 2.4e-26 123.6 111 63.1
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 7.1e-26 122.1 128 57.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 3.5e-25 119.8 229 36.2
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.0e-24 116.7 237 38.0
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 3.9e-24 116.3 74 85.1
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.1e-23 114.8 185 41.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 4.3e-23 112.8 231 36.4
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 8.9e-21 105.1 259 30.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.5e-20 104.4 73 74.0
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 3.4e-20 103.2 122 48.4
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 1.3e-19 101.3 138 48.6
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 1.7e-19 100.9 252 32.1
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.2e-19 100.5 143 46.2
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 1.4e-18 97.8 188 41.5
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 6.0e-17 92.4 111 50.5
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.0e-17 92.4 116 53.4
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.0e-17 92.4 116 53.4
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 1.0e-16 91.7 259 30.1
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.9e-16 89.7 116 52.6
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 1.1e-15 88.2 52 90.4
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.1e-09 67.4 145 38.6
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 3.5e-09 66.6 198 29.8
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 7.9e-09 65.5 87 43.7
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.3e-08 64.7 45 77.8
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.7e-08 62.4 79 43.0
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.5e-07 61.2 86 46.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.5e-07 61.2 203 28.6
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 4.8e-06 56.2 48 60.4


User provided reference genes

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