Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2295 Fragaria x ananassa HOM05D000186 ORTHO05D025616 5.5e-44 180.6 96 100.0
FAN02G2381 Fragaria x ananassa HOM05D000186 ORTHO05D025616 1.5e-41 172.6 97 97.9
FAN09G1716 Fragaria x ananassa HOM05D000186 ORTHO05D008992 5.4e-39 164.1 87 97.7
FvH4_6g37890 Fragaria vesca HOM05D000186 ORTHO05D008992 3.9e-37 157.9 90 94.4
MD09G1155100 Malus domestica HOM05D000186 ORTHO05D008992 2.0e-30 135.6 87 79.3
RcHm_v2.0_Chr2g0151041 Rosa chinensis HOM05D000186 ORTHO05D008992 1.5e-28 129.4 89 79.8
Prupe.3G170700 Prunus persica HOM05D000186 ORTHO05D008992 2.5e-28 128.6 87 80.5
MD17G1141200 Malus domestica HOM05D000186 ORTHO05D008992 1.2e-25 119.8 87 70.1
Cfa022917 Carpinus fangiana HOM05D000186 ORTHO05D008992 6.4e-24 114.0 89 71.9
CiPaw.03G189500 Carya illinoinensis HOM05D000186 ORTHO05D008992 1.9e-23 112.5 88 69.3
PGR042G0819 Punica granatum HOM05D000186 ORTHO05D008992 1.9e-23 112.5 89 67.4
QL08p043842 Quercus lobata HOM05D000186 ORTHO05D008992 6.0e-22 107.5 91 64.8
Ciclev10031200m.g Citrus clementina HOM05D000186 ORTHO05D008992 2.3e-21 105.5 90 66.7
Atru.chr6.1593 Acer truncatum HOM05D000186 ORTHO05D008992 3.0e-21 105.1 86 64.0
Atru.chr6.1596 Acer truncatum HOM05D000186 ORTHO05D008992 3.0e-21 105.1 86 64.0
Manes.02G085400 Manihot esculenta HOM05D000186 ORTHO05D008992 3.0e-21 105.1 88 65.9
Dinv12700 Davidia involucrata HOM05D000186 ORTHO05D008992 5.1e-21 104.4 107 58.9
Hma1.2p1_0036F.1_g023600 Hydrangea macrophylla HOM05D000186 ORTHO05D008992 5.1e-21 104.4 109 56.9
CANSAT64G1329 Cannabis sativa HOM05D000186 ORTHO05D008992 1.1e-20 103.2 93 63.4
GSVIVG01000800001 Vitis vinifera HOM05D000186 ORTHO05D008992 1.1e-20 103.2 85 65.9
Potri.014G142000 Populus trichocarpa HOM05D000186 ORTHO05D008992 7.3e-20 100.5 87 60.9
CSS0000777 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D008992 1.4e-18 96.3 100 56.0
Rhsim04G0081800 Rhododendron simsii HOM05D000186 ORTHO05D008992 1.8e-18 95.9 93 57.0
Thecc.01G160400 Theobroma cacao HOM05D000186 ORTHO05D008992 1.8e-18 95.9 96 59.4
Glyma.08G309900 Glycine max HOM05D000186 ORTHO05D008992 4.0e-18 94.7 91 61.5
TAR627G0425 Trochodendron aralioides HOM05D000186 ORTHO05D008992 4.0e-18 94.7 90 60.0
THA.LOC104803166 Tarenaya hassleriana HOM05D000186 ORTHO05D008992 5.2e-18 94.4 89 62.9
A09p51340 Brassica napus HOM05D000186 ORTHO05D008992 6.8e-18 94.0 88 58.0
BraA09t40575Z Brassica rapa HOM05D000186 ORTHO05D008992 6.8e-18 94.0 88 58.0
Glyma.18G105900 Glycine max HOM05D000186 ORTHO05D008992 1.5e-17 92.8 91 59.3
Phvul.006G034100 Phaseolus vulgaris HOM05D000186 ORTHO05D008992 1.5e-17 92.8 93 59.1
BcaC07g40296 Brassica carinata HOM05D000186 ORTHO05D008992 2.0e-17 92.4 88 56.8
C08p34120 Brassica napus HOM05D000186 ORTHO05D008992 2.0e-17 92.4 88 56.8
BolC8t51011H Brassica oleracea HOM05D000186 ORTHO05D008992 2.0e-17 92.4 88 56.8
Medtr3g452360 Medicago truncatula HOM05D000186 ORTHO05D008992 2.6e-17 92.0 97 58.8
Lj6g0023819 Lotus japonicus HOM05D000186 ORTHO05D008992 3.4e-17 91.7 96 57.3
BcaB02g07497 Brassica carinata HOM05D000186 ORTHO05D008992 4.4e-17 91.3 88 60.2
BcaB02g07499 Brassica carinata HOM05D000186 ORTHO05D008992 4.4e-17 91.3 88 60.2
Duzib264G1234 Durio zibethinus HOM05D000186 ORTHO05D008992 7.6e-17 90.5 101 57.4
Ca_18596_v3 Cicer arietinum L. HOM05D000186 ORTHO05D008992 9.9e-17 90.1 96 55.2
ClCG02G018360 Citrullus lanatus HOM05D000186 ORTHO05D008992 1.3e-16 89.7 102 52.9
TPR.G16778 Trifolium pratense HOM05D000186 ORTHO05D008992 1.3e-16 89.7 98 57.1
MELO3C019691.2 Cucumis melo HOM05D000186 ORTHO05D008992 1.7e-16 89.4 86 58.1
Psat5g197440 Pisum sativum HOM05D000186 ORTHO05D008992 1.7e-16 89.4 100 54.0
CsaV3_6G015780 Cucumis sativus L. HOM05D000186 ORTHO05D008992 2.9e-16 88.6 86 57.0
Duzib147G0052 Durio zibethinus HOM05D000186 ORTHO05D008992 2.9e-16 88.6 95 56.8
BcaC08g44943 Brassica carinata HOM05D000186 ORTHO05D008992 3.7e-16 88.2 88 56.8
C06p25750 Brassica napus HOM05D000186 ORTHO05D008992 3.7e-16 88.2 88 56.8
BolC6t37737H Brassica oleracea HOM05D000186 ORTHO05D008992 3.7e-16 88.2 88 56.8
Carub.0005s2557 Capsella rubella HOM05D000186 ORTHO05D008992 3.7e-16 88.2 88 55.7
VMungo0540G1858 Vigna mungo HOM05D000186 ORTHO05D008992 3.7e-16 88.2 92 56.5
Solyc07g055930.3 Solanum lycopersicum HOM05D000186 ORTHO05D008992 4.9e-16 87.8 101 54.5
BcaC07g40227 Brassica carinata HOM05D000186 ORTHO05D008992 6.4e-16 87.4 89 58.4
Sopen07g029290 Solanum pennellii HOM05D000186 ORTHO05D008992 6.4e-16 87.4 101 54.5
Hma1.2p1_0036F.1_g023610 Hydrangea macrophylla HOM05D000186 ORTHO05D025616 1.1e-15 86.7 59 71.2
Hma1.2p1_1974F.1_g309655 Hydrangea macrophylla HOM05D000186 ORTHO05D025616 1.1e-15 86.7 59 71.2
arahy.Tifrunner.gnm1.ann1.01B6ZB Arachis hypogaea HOM05D000186 ORTHO05D008992 1.9e-15 85.9 96 59.4
Peaxi162Scf00154g00517 Petunia axillaris HOM05D000186 ORTHO05D008992 3.2e-15 85.1 101 54.5
PGSC0003DMG400017341 Solanum tuberosum HOM05D000186 ORTHO05D008992 3.2e-15 85.1 99 55.6
Haze_13482 Corylus avellana HOM05D000186 ORTHO05D008992 4.1e-15 84.7 56 76.8
MBI07_g30207_MAGBIO Magnolia biondii HOM05D000186 ORTHO05D008992 4.1e-15 84.7 95 53.7
Nitab4.5_0003507g0020 Nicotiana tabacum HOM05D000186 ORTHO05D008992 5.4e-15 84.3 102 53.9
Eucgr.A01962 Eucalyptus grandis HOM05D000186 ORTHO05D008992 9.2e-15 83.6 102 50.0
Cc05_g09260 Coffea canephora HOM05D000186 ORTHO05D008992 4.6e-14 81.3 100 50.0
Gorai.012G042500 Gossypium raimondii HOM05D000186 ORTHO05D008992 1.0e-13 80.1 87 56.3
arahy.Tifrunner.gnm1.ann1.029YN0 Arachis hypogaea HOM05D000186 ORTHO05D008992 1.3e-13 79.7 100 46.0
arahy.Tifrunner.gnm1.ann1.4JLS0K Arachis hypogaea HOM05D000186 ORTHO05D008992 1.3e-13 79.7 100 46.0
THA.LOC104802274 Tarenaya hassleriana HOM05D000186 ORTHO05D008992 1.3e-13 79.7 93 52.7
Nitab4.5_0001121g0250 Nicotiana tabacum HOM05D000186 ORTHO05D008992 1.7e-13 79.3 101 52.5
Sabra14G0107200 Salix brachista HOM05D000186 ORTHO05D008992 2.3e-13 79.0 74 58.1
Actinidia03644 Actinidia chinensis HOM05D000186 ORTHO05D008992 1.9e-12 75.9 84 52.4
DCAR_013304 Daucus carota HOM05D000186 ORTHO05D008992 1.9e-12 75.9 92 51.1
AL5G40570 Arabidopsis lyrata HOM05D000186 ORTHO05D008992 3.3e-12 75.1 94 50.0
CAN.G585.56 Capsicum annuum HOM05D000186 ORTHO05D008992 7.3e-12 73.9 100 47.0
MSTRG.15055 Avicennia marina HOM05D000186 ORTHO05D008992 9.6e-12 73.6 103 48.5
TWI39G0008 Tripterygium wilfordii HOM05D000186 ORTHO05D008992 9.6e-12 73.6 77 58.4
Nn3g20969 Nelumbo nucifera HOM05D000186 ORTHO05D008992 3.6e-11 71.6 95 46.3
Nn6g34394 Nelumbo nucifera HOM05D000186 ORTHO05D008992 3.6e-11 71.6 97 45.4
BraA07t30083Z Brassica rapa HOM05D000186 ORTHO05D008992 2.4e-10 68.9 89 47.2
Lalb_Chr04g0248711 Lupinus albus HOM05D000186 ORTHO05D008992 2.4e-10 68.9 93 46.2
vmacro09188 Vaccinium macrocarpon HOM05D000186 ORTHO05D025616 2.0e-09 65.9 96 46.9
SalBow7G0511 Salvia bowleyana HOM05D000186 ORTHO05D008992 2.6e-09 65.5 66 62.1
Thhalv10005879m.g Eutrema salsugineum HOM05D000186 ORTHO05D008992 9.9e-09 63.5 91 45.1
Aa31LG10G13370 Aethionema arabicum HOM05D000186 ORTHO05D008992 1.3e-08 63.2 94 44.7
AT3G58790 Arabidopsis thaliana HOM05D000186 ORTHO05D008992 1.3e-08 63.2 94 44.7
A07p24350 Brassica napus HOM05D000186 ORTHO05D008992 2.2e-08 62.4 89 44.9
CDE08G0781 Ceratophyllum demersum HOM05D000186 ORTHO05D008992 6.4e-08 60.8 83 47.0
Glyma.14G027400 Glycine max HOM05D000186 ORTHO05D008992 8.4e-08 60.5 89 46.1
CDE02G1189 Ceratophyllum demersum HOM05D000186 ORTHO05D008992 2.4e-07 58.9 79 45.6
ATR0737G112 Amborella trichopoda HOM05D000186 ORTHO05D001471 9.3e-07 57.0 58 55.2
MSTRG.6756 Avicennia marina HOM05D000186 ORTHO05D008992 9.3e-07 57.0 65 55.4
Sp5g04050 Schrenkiella parvula HOM05D000186 ORTHO05D008992 9.3e-07 57.0 94 40.4
VMungo0647G1313 Vigna mungo HOM05D000186 ORTHO05D008992 2.1e-06 55.8 89 43.8


User provided reference genes

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