Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.7e-107 391.0 202 100.0
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.7e-107 391.0 202 100.0
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.6e-85 318.5 202 86.1
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.4e-84 316.6 205 84.9
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-75 286.6 196 82.7
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.6e-69 265.4 181 81.8
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 4.7e-69 265.0 200 77.0
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.3e-62 242.3 200 71.0
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.6e-61 238.8 200 69.5
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 4.7e-61 238.4 200 69.5
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 8.3e-58 227.6 134 89.6
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-56 223.4 134 88.8
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.6e-51 204.5 129 81.4
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 7.1e-49 198.0 134 76.9
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 7.8e-48 194.5 135 74.8
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.3e-47 193.7 138 76.8
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.7e-47 193.4 138 79.0
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 3.9e-47 192.2 136 77.2
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 8.6e-47 191.0 134 74.6
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 1.1e-46 190.7 137 76.6
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.5e-46 190.3 138 74.6
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.9e-46 189.9 136 77.9
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.5e-46 189.5 151 70.9
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 3.3e-46 189.1 140 75.0
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 4.3e-46 188.7 136 77.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.3e-46 188.0 137 73.7
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 7.3e-46 188.0 136 73.5
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 7.3e-46 188.0 138 74.6
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 9.6e-46 187.6 137 73.7
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 9.6e-46 187.6 105 87.6
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 9.6e-46 187.6 141 71.6
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 9.6e-46 187.6 136 73.5
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.2e-45 187.2 137 75.2
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.1e-45 186.4 147 70.7
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 4.7e-45 185.3 141 70.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.7e-45 185.3 143 72.7
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 4.7e-45 185.3 136 74.3
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.7e-45 185.3 136 72.8
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 6.2e-45 184.9 141 70.2
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 8.1e-45 184.5 136 74.3
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.1e-44 184.1 176 61.4
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.4e-44 183.7 134 74.6
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.4e-44 183.7 136 72.8
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 1.8e-44 183.3 135 74.8
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 1.8e-44 183.3 138 76.1
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.4e-44 183.0 138 73.9
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 8.9e-44 181.0 134 69.4
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 1.5e-43 180.3 138 71.7
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 2.0e-43 179.9 138 73.2
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.0e-43 179.9 136 72.1
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.6e-43 179.5 139 73.4
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 3.4e-43 179.1 134 71.6
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 4.4e-43 178.7 135 68.9
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 5.8e-43 178.3 136 72.8
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 9.9e-43 177.6 136 72.1
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 9.9e-43 177.6 149 67.8
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.3e-42 177.2 113 85.0
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-42 177.2 137 73.0
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.7e-42 176.8 136 69.9
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.7e-42 176.8 135 69.6
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.2e-42 176.4 135 68.9
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 2.2e-42 176.4 135 69.6
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.9e-42 176.0 132 76.5
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 4.9e-42 175.3 136 69.1
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 4.9e-42 175.3 136 72.8
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 4.9e-42 175.3 139 66.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 8.4e-42 174.5 137 73.0
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 8.4e-42 174.5 136 72.8
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 8.4e-42 174.5 136 70.6
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 1.4e-41 173.7 136 70.6
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 2.4e-41 172.9 135 68.1
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.4e-41 172.9 136 67.6
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.2e-41 172.6 137 70.1
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 4.2e-41 172.2 138 68.8
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 5.4e-41 171.8 130 72.3
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 5.4e-41 171.8 138 70.3
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.4e-41 171.8 136 70.6
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.4e-41 171.8 136 70.6
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 7.1e-41 171.4 113 77.0
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 1.2e-40 170.6 136 68.4
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.2e-40 170.6 138 69.6
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.7e-40 169.5 140 68.6
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.5e-40 169.1 106 79.2
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 3.5e-40 169.1 138 70.3
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 3.5e-40 169.1 137 70.1
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 4.6e-40 168.7 135 67.4
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.8e-40 167.9 137 66.4
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.0e-39 167.5 98 86.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.3e-39 167.2 105 77.1
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.3e-39 167.2 105 77.1
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.3e-39 167.2 105 77.1
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.3e-39 167.2 105 77.1
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.3e-39 166.4 137 64.2
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.3e-39 166.4 137 67.2
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 3.9e-39 165.6 101 83.2
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 6.6e-39 164.9 141 64.5
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 6.6e-39 164.9 126 67.5
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 8.7e-39 164.5 136 66.2
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.1e-38 164.1 137 63.5
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 2.5e-38 162.9 133 66.9
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 2.5e-38 162.9 90 85.6
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.3e-38 162.2 93 81.7
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 4.3e-38 162.2 129 68.2
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 5.6e-38 161.8 131 66.4
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 7.3e-38 161.4 117 72.6
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 2.1e-37 159.8 106 76.4
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.6e-37 159.1 92 82.6
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 8.1e-37 157.9 120 70.0
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 1.1e-36 157.5 134 67.2
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.4e-36 157.1 106 76.4
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 1.4e-36 157.1 136 65.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.4e-36 156.4 106 75.5
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 3.1e-36 156.0 135 61.5
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 1.2e-35 154.1 92 79.3
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.4e-35 152.5 92 78.3
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 3.4e-35 152.5 124 70.2
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 4.4e-35 152.1 128 66.4
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 7.6e-35 151.4 134 61.9
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 9.9e-35 151.0 92 78.3
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.7e-34 150.2 100 75.0
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.4e-33 146.4 104 71.2
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.6e-32 143.7 104 68.3
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.6e-32 142.1 137 56.2
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 5.1e-31 138.7 90 75.6
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.1e-28 131.0 113 60.2
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.6e-27 126.3 123 63.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.6e-27 124.8 134 58.2
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.4e-25 118.6 100 64.0
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 2.8e-21 106.3 126 47.6
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 8.1e-21 104.8 107 50.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.8e-20 103.6 92 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 2.6e-19 99.8 91 52.7
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.3e-18 97.4 108 49.1
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 4.6e-16 89.0 51 78.4
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 6.9e-12 75.1 62 61.3
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.3e-10 70.9 98 42.9
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 3.8e-10 69.3 138 35.5
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 1.4e-09 67.4 112 46.4
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 3.3e-06 56.2 95 34.7
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 5.7e-06 55.5 83 51.8


User provided reference genes

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