Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.2e-140 502.3 256 100.0
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 3.7e-135 485.0 256 96.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 2.6e-109 399.1 262 80.2
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 3.5e-93 345.5 267 70.0
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.2e-87 326.2 256 71.9
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 1.0e-84 317.4 238 68.5
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 3.3e-83 312.4 245 65.7
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 4.3e-83 312.0 239 68.2
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 7.5e-80 301.2 227 68.7
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 7.5e-80 301.2 257 63.0
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 9.8e-80 300.8 226 69.0
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 1.4e-78 297.0 231 67.1
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 2.0e-77 293.1 243 65.0
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.3e-76 290.4 252 63.9
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 2.5e-75 286.2 241 65.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 3.3e-75 285.8 225 67.6
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 5.6e-75 285.0 229 65.5
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 9.5e-75 284.3 240 63.8
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.2e-74 283.9 245 63.3
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 4.7e-74 282.0 248 62.1
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.4e-73 280.4 254 60.6
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 1.5e-72 276.9 242 60.3
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 3.7e-71 272.3 226 63.7
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.1e-70 270.8 137 98.5
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 4.1e-70 268.9 237 60.3
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 7.0e-70 268.1 231 61.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 1.2e-69 267.3 247 57.1
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 2.1e-69 266.5 257 55.6
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.1e-69 266.5 237 59.9
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 1.0e-68 264.2 242 59.9
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.3e-68 263.8 233 60.5
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.3e-68 263.1 232 60.3
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 7.3e-67 258.1 202 67.8
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 2.1e-66 256.5 240 58.8
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 2.3e-65 253.1 246 56.1
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 5.2e-65 251.9 234 60.3
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 1.4e-62 243.8 240 56.7
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 2.4e-62 243.0 240 56.7
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 9.2e-62 241.1 249 54.2
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.6e-61 240.4 240 52.9
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 8.6e-60 234.6 249 53.0
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.1e-59 234.2 235 54.0
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 1.1e-59 234.2 241 53.9
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.5e-59 233.8 248 53.6
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.9e-59 233.4 230 54.8
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 3.3e-59 232.6 261 50.2
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 7.3e-59 231.5 230 56.5
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 4.7e-58 228.8 241 50.6
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 6.2e-58 228.4 230 54.8
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 6.2e-58 228.4 230 54.8
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 8.1e-58 228.0 236 52.1
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 8.1e-58 228.0 246 51.2
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 1.4e-57 227.3 246 53.7
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 3.1e-57 226.1 237 52.7
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 4.0e-57 225.7 244 52.5
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 5.2e-57 225.3 232 53.0
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 8.9e-57 224.6 237 51.9
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 8.9e-57 224.6 234 53.4
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 1.2e-56 224.2 247 49.8
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 1.5e-56 223.8 241 50.2
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 2.0e-56 223.4 236 54.2
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 2.6e-56 223.0 241 53.5
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 2.6e-56 223.0 247 50.2
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 3.4e-56 222.6 245 53.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 4.4e-56 222.2 241 49.8
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 3.8e-55 219.2 231 51.5
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.8e-55 219.2 232 50.9
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 4.9e-55 218.8 257 50.6
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 2.4e-54 216.5 215 56.3
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 9.2e-54 214.5 237 50.6
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.2e-53 214.2 234 52.1
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.2e-53 214.2 286 44.1
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 2.7e-53 213.0 239 51.5
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 3.5e-53 212.6 254 49.2
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.7e-52 210.3 205 53.7
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.3e-52 209.9 249 49.4
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 8.7e-52 208.0 233 50.6
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 2.8e-50 203.0 232 52.2
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 3.6e-50 202.6 248 47.6
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 4.7e-50 202.2 228 50.4
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 8.1e-50 201.4 231 48.5
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.0e-48 196.8 252 46.8
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.6e-45 187.2 250 48.0
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.0e-44 184.5 243 48.6
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 1.7e-44 183.7 237 48.9
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 4.9e-39 165.6 246 43.5
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 5.1e-36 155.6 243 45.3
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 4.0e-33 146.0 287 34.8
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.6e-32 143.3 170 50.0
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 5.8e-32 142.1 325 32.0
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.7e-31 140.6 302 34.8
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.2e-30 136.3 138 55.1
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.6e-29 134.0 138 54.3
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 3.3e-27 126.3 151 50.3
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.6e-26 124.0 138 51.4
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 2.1e-26 123.6 96 67.7
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 2.1e-26 123.6 202 45.0
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 2.0e-24 117.1 102 61.8
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 2.6e-24 116.7 217 39.2
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 1.9e-22 110.5 178 40.4
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 9.0e-17 91.7 97 48.5
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.5e-14 83.6 116 42.2
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 5.5e-14 82.4 73 64.4
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 1.2e-08 64.7 288 26.4
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 4.2e-06 56.2 104 35.6


User provided reference genes

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