Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.9e-114 414.1 221 100.0
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-111 405.2 225 97.3
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-111 405.2 225 97.3
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.0e-109 400.2 221 97.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 2.6e-105 385.6 227 94.3
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-100 369.8 227 92.1
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.9e-85 318.5 229 81.7
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.3e-43 180.6 242 55.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.7e-43 180.3 220 60.5
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.1e-42 177.6 225 57.3
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.5e-41 172.6 241 55.6
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 3.5e-41 172.6 221 56.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.5e-41 172.2 242 54.5
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.1e-39 167.5 222 55.9
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-39 167.2 220 56.4
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-39 167.2 220 56.4
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.9e-39 166.8 220 57.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 4.3e-39 165.6 236 53.0
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.2e-38 164.1 236 53.4
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.7e-38 162.2 219 55.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 8.0e-38 161.4 235 52.3
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.3e-37 159.8 220 57.3
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 2.3e-37 159.8 222 53.2
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 5.2e-37 158.7 224 56.2
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 5.2e-37 158.7 238 52.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.4e-36 155.6 220 54.5
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 5.4e-34 148.7 211 54.5
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 1.2e-33 147.5 215 52.1
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.6e-33 147.1 231 50.2
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-33 146.7 221 51.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.5e-33 146.0 231 48.5
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-31 140.2 207 52.7
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.5e-31 139.8 253 47.0
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.5e-31 139.8 215 51.2
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.3e-31 139.4 231 49.4
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 5.6e-31 138.7 220 51.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 5.6e-31 138.7 252 46.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.6e-30 137.1 219 53.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.6e-30 136.0 219 49.8
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.6e-30 136.0 219 52.1
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 6.2e-30 135.2 236 50.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 6.2e-30 135.2 217 51.2
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 6.2e-30 135.2 211 49.3
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.8e-29 133.7 223 47.1
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.8e-29 133.7 222 48.6
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 3.1e-29 132.9 218 50.9
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.5e-28 130.6 195 52.3
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.4e-28 129.4 198 52.5
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.3e-27 127.5 184 52.7
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 2.2e-27 126.7 217 48.4
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 3.7e-27 125.9 197 52.3
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.9e-27 125.6 193 53.9
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.9e-27 125.6 221 47.1
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.1e-26 124.4 238 46.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.1e-26 124.4 221 46.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.4e-26 123.2 195 52.3
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 3.2e-26 122.9 225 44.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.2e-26 122.9 245 43.7
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 3.2e-26 122.9 245 43.7
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 7.0e-26 121.7 242 43.8
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.2e-26 121.3 212 45.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.7e-25 119.8 244 43.9
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.6e-25 119.0 212 45.3
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 6.0e-25 118.6 190 50.0
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 6.0e-25 118.6 206 49.5
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.7e-24 117.1 228 43.4
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.5e-23 114.0 198 48.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-23 113.6 208 44.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 5.6e-23 112.1 222 45.0
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 7.3e-23 111.7 186 47.8
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.6e-22 110.5 242 40.1
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.7e-22 109.0 251 40.2
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.0e-21 105.9 175 49.1
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.0e-21 105.9 260 38.8
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.8e-21 105.1 175 49.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.9e-21 104.8 191 45.5
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 8.9e-21 104.8 236 42.8
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.5e-20 104.0 175 49.1
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 3.4e-20 102.8 239 40.6
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.4e-20 102.4 246 39.0
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 5.8e-20 102.1 221 42.1
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 5.8e-20 102.1 240 40.8
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.3e-19 100.9 253 37.5
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.9e-19 99.8 216 41.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 2.9e-19 99.8 216 40.7
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 4.9e-19 99.0 228 40.8
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 6.4e-19 98.6 246 37.4
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 6.4e-19 98.6 233 39.5
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 6.4e-19 98.6 246 37.4
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 8.3e-19 98.2 237 41.4
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 8.3e-19 98.2 259 39.0
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-18 97.8 240 40.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.1e-18 97.8 246 37.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-18 97.4 240 38.3
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.9e-18 97.1 246 36.6
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-18 97.1 162 45.7
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 3.2e-18 96.3 214 40.7
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.4e-18 95.5 249 39.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 7.1e-18 95.1 242 38.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.1e-18 95.1 161 46.6
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 9.2e-18 94.7 205 42.9
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.1e-17 93.6 218 42.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.1e-17 93.6 209 41.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.7e-17 93.2 163 44.8
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 3.5e-17 92.8 235 36.6
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.5e-17 92.8 200 41.5
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.5e-17 92.8 255 35.7
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 4.6e-17 92.4 249 36.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.0e-17 92.0 180 45.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 7.8e-17 91.7 222 39.6
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.3e-16 90.9 169 43.2
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 3.0e-16 89.7 175 45.1
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 3.9e-16 89.4 203 41.9
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.5e-15 87.4 239 37.7
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-15 87.0 230 39.1
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.9e-15 87.0 203 40.9
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 2.5e-15 86.7 196 42.3
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 5.6e-15 85.5 204 41.2
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 9.5e-15 84.7 220 36.8
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 3.6e-14 82.8 172 43.6
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 6.2e-14 82.0 131 51.9
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 8.1e-14 81.6 139 43.2
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.4e-13 80.9 203 40.4
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.1e-13 79.7 195 41.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.2e-12 77.8 121 49.6
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.0e-12 77.0 145 42.1
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-12 77.0 82 58.5
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.0e-12 77.0 189 41.8
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.6e-12 76.6 187 37.4
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.6e-12 76.6 276 34.4
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.4e-12 76.3 204 38.7
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.4e-12 76.3 176 42.0
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 3.8e-11 72.8 196 37.8
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.9e-11 72.4 270 31.9
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 6.4e-11 72.0 337 31.2
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 5.4e-10 68.9 154 37.0
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 7.1e-10 68.6 149 39.6
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 4.6e-09 65.9 176 35.8
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.0e-08 64.7 134 43.3
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 5.1e-08 62.4 152 37.5
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 6.6e-08 62.0 88 51.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.1e-07 61.2 299 29.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.9e-07 60.5 312 28.8
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.3e-07 59.7 144 43.1
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.6e-06 57.4 207 32.4


User provided reference genes

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