Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.8e-133 479.2 232 100.0
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 4.4e-127 458.0 232 96.1
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.8e-126 454.5 232 95.7
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 4.2e-114 414.8 232 85.8
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 1.1e-101 373.6 230 79.1
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 2.8e-94 349.0 232 73.3
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 5.9e-92 341.3 230 70.4
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 6.6e-91 337.8 230 68.3
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 1.9e-90 336.3 224 70.1
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 6.8e-88 327.8 228 67.5
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 1.5e-87 326.6 215 71.6
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.4e-87 325.1 230 68.7
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 2.9e-86 322.4 224 67.0
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 6.4e-86 321.2 216 70.4
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 8.3e-86 320.9 228 66.2
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 5.4e-85 318.2 230 67.8
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.2e-84 317.0 232 65.5
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.2e-84 317.0 230 67.0
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.6e-84 316.6 223 66.4
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 2.0e-84 316.2 216 69.0
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 2.7e-84 315.8 232 66.4
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 3.5e-84 315.5 223 66.4
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 3.5e-84 315.5 230 66.1
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 5.9e-84 314.7 232 65.5
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 5.9e-84 314.7 232 65.5
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 2.3e-83 312.8 230 66.1
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 2.3e-83 312.8 228 64.9
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 1.1e-82 310.5 235 64.3
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 7.3e-82 307.8 231 62.8
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 7.3e-82 307.8 218 64.2
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 2.1e-81 306.2 231 62.3
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 3.6e-81 305.4 241 61.4
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 3.6e-81 305.4 227 66.1
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 8.0e-81 304.3 225 64.0
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.1e-80 303.9 230 63.0
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 1.4e-80 303.5 214 65.9
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 2.3e-80 302.8 217 65.0
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 5.2e-80 301.6 222 64.0
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.2e-79 300.4 231 62.3
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 1.2e-79 300.4 222 61.3
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 2.0e-79 299.7 218 66.1
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 4.4e-79 298.5 219 65.3
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 4.4e-79 298.5 221 64.7
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 4.4e-79 298.5 221 64.7
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 9.8e-79 297.4 216 66.7
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 1.3e-78 297.0 210 63.8
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.3e-78 297.0 216 63.4
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 1.3e-78 297.0 219 65.8
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 1.7e-78 296.6 226 63.7
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 2.2e-78 296.2 221 60.6
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.9e-78 295.8 215 61.9
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 3.7e-78 295.4 215 66.5
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 4.9e-78 295.0 224 59.8
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 4.9e-78 295.0 229 61.6
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 6.4e-78 294.7 215 62.8
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 8.3e-78 294.3 221 60.6
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 8.3e-78 294.3 215 67.4
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 8.3e-78 294.3 228 62.7
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.4e-77 293.5 217 63.6
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 2.4e-77 292.7 224 64.3
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 2.4e-77 292.7 228 61.4
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 3.2e-77 292.4 215 60.5
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 3.2e-77 292.4 229 61.1
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 4.1e-77 292.0 218 63.8
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 9.2e-77 290.8 215 59.1
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 9.2e-77 290.8 227 61.7
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 1.2e-76 290.4 225 62.7
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 1.2e-76 290.4 218 62.8
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 8.6e-75 284.3 239 55.6
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 4.3e-74 282.0 239 55.2
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 5.6e-74 281.6 233 55.8
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 1.1e-72 277.3 212 61.3
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 1.4e-72 276.9 245 53.1
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 1.2e-71 273.9 219 59.4
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 5.8e-71 271.6 230 58.7
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 1.3e-70 270.4 215 63.7
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 2.9e-70 269.2 223 60.5
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 5.4e-69 265.0 188 64.4
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 2.7e-68 262.7 248 54.4
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 6.0e-68 261.5 130 94.6
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 3.3e-66 255.8 199 59.8
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 4.3e-66 255.4 197 60.4
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 2.8e-65 252.7 214 54.7
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 8.1e-65 251.1 229 55.9
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 2.4e-64 249.6 211 57.3
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 6.8e-64 248.1 200 61.5
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 9.9e-63 244.2 230 55.2
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 3.8e-62 242.3 167 68.9
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 1.1e-61 240.7 177 63.3
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 5.4e-61 238.4 199 56.3
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.1e-58 230.7 217 51.6
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 2.1e-57 226.5 164 65.9
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 2.8e-57 226.1 204 52.5
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 1.1e-56 224.2 177 57.6
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.1e-56 224.2 175 58.3
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 1.2e-55 220.7 246 48.4
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 4.4e-55 218.8 192 58.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 4.0e-48 195.7 222 45.5
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 3.9e-43 179.1 194 45.4
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 3.3e-42 176.0 199 46.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 3.1e-40 169.5 111 73.0
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.0e-40 169.1 211 43.1
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.1e-29 134.4 164 44.5
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 6.7e-27 125.2 80 67.5
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 3.3e-26 122.9 97 56.7
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.4e-24 117.5 114 50.0
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 3.3e-18 96.3 101 44.6
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 9.1e-16 88.2 91 47.3
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 6.5e-14 82.0 100 41.0
Rhsim03G0024500 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.4e-07 59.7 49 57.1


User provided reference genes

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