Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.4e-202 707.2 363 100.0
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.3e-189 666.4 358 94.1
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.8e-183 646.0 363 91.7
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 7.5e-158 560.8 343 85.4
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 1.4e-127 460.3 333 69.7
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 1.9e-121 439.9 330 66.7
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 2.9e-117 426.0 332 66.9
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.9e-116 423.3 329 65.0
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 1.2e-115 420.6 330 63.0
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.7e-115 419.5 334 64.4
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 1.3e-114 417.2 328 64.6
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.7e-114 416.8 330 61.8
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 3.0e-114 416.0 332 61.4
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 2.5e-113 412.9 336 61.6
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 4.3e-113 412.1 328 63.4
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.1e-111 407.5 337 62.9
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 2.4e-111 406.4 336 62.8
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 5.2e-111 405.2 343 60.1
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 5.2e-111 405.2 335 62.7
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 6.8e-111 404.8 338 61.5
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 6.8e-111 404.8 331 62.8
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 7.6e-110 401.4 335 61.2
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 2.9e-109 399.4 333 61.6
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 8.4e-109 397.9 331 59.8
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.1e-108 397.5 328 62.2
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 7.1e-108 394.8 329 61.1
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 7.8e-107 391.3 329 62.0
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.3e-106 390.6 330 59.1
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.7e-106 390.2 361 54.3
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.9e-106 389.0 333 60.4
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.1e-105 387.5 326 62.0
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 1.1e-105 387.5 345 58.6
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.5e-105 386.3 330 59.1
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 2.5e-105 386.3 381 54.1
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 3.3e-105 386.0 386 55.2
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 4.3e-105 385.6 330 61.8
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 7.3e-105 384.8 329 62.0
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 9.6e-105 384.4 332 58.7
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 9.6e-105 384.4 332 59.9
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 3.6e-104 382.5 330 61.2
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.1e-103 380.9 334 60.8
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 2.4e-103 379.8 330 58.2
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.5e-102 377.1 330 57.9
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 2.0e-102 376.7 333 60.1
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 2.6e-102 376.3 338 57.4
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 7.6e-102 374.8 333 58.6
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.2e-101 373.2 329 59.3
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.9e-101 372.9 335 58.8
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 4.9e-101 372.1 329 59.3
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 6.4e-101 371.7 329 61.1
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.2e-99 367.5 326 57.4
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 2.7e-99 366.3 332 58.7
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 2.7e-99 366.3 332 58.7
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 2.7e-99 366.3 328 59.1
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.1e-97 360.9 322 58.4
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.3e-96 357.5 336 55.1
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.1e-95 354.4 355 55.8
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.4e-95 353.2 272 63.6
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 3.1e-95 352.8 333 56.2
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 4.0e-95 352.4 332 56.9
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 2.6e-94 349.7 330 55.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.4e-94 349.4 350 56.3
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 3.4e-94 349.4 336 55.7
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 3.4e-94 349.4 336 54.2
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 5.8e-94 348.6 335 54.3
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 9.9e-94 347.8 327 54.7
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 1.7e-93 347.1 335 55.8
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 8.4e-93 344.7 339 56.6
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 8.4e-93 344.7 338 53.3
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.1e-92 344.4 336 54.8
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.1e-92 344.4 338 56.2
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.4e-92 344.0 337 55.8
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.9e-92 343.6 299 58.5
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 3.2e-92 342.8 290 62.4
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 7.1e-92 341.7 332 56.9
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 9.3e-92 341.3 330 55.5
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.6e-91 340.5 327 52.0
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 6.0e-91 338.6 335 52.8
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 1.5e-89 334.0 331 54.7
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 7.4e-89 331.6 333 54.4
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.3e-88 330.9 331 54.4
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 2.8e-88 329.7 335 51.9
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 6.2e-88 328.6 333 54.4
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 1.1e-87 327.8 330 53.6
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.4e-87 327.4 358 52.8
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.4e-87 327.4 358 52.8
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 5.3e-87 325.5 352 52.0
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 3.4e-86 322.8 357 50.1
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.7e-85 320.5 238 72.7
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 1.9e-84 317.0 254 64.6
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 5.5e-84 315.5 339 51.9
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.1e-80 303.5 295 56.6
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 3.7e-80 302.8 328 52.7
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 4.0e-79 299.3 329 47.4
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 4.2e-76 289.3 214 67.3
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 5.5e-76 288.9 246 55.7
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 1.2e-75 287.7 339 47.8
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 2.7e-75 286.6 250 55.6
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 4.8e-72 275.8 392 43.6
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.8e-66 257.3 279 52.7
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.4e-63 247.7 217 59.9
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 2.4e-63 246.9 329 43.2
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.4e-63 246.9 373 39.4
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 5.9e-62 242.3 325 47.1
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.1e-57 228.0 183 60.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.0e-53 214.9 380 34.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 3.9e-50 203.0 337 41.5
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 1.1e-36 158.3 182 48.4
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.8e-33 145.2 80 91.2
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 1.3e-32 144.8 152 53.3
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.8e-32 142.9 203 43.8
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 4.1e-23 113.2 80 67.5
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 7.0e-23 112.5 88 61.4
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 5.9e-22 109.4 168 41.7
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.1e-20 105.1 73 67.1
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 2.1e-11 74.3 179 26.8
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 9.8e-09 65.5 175 26.9
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.3e-08 65.1 176 29.5
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 2.2e-08 64.3 180 26.1
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 3.7e-08 63.5 193 29.5
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 3.7e-08 63.5 180 26.1
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.9e-08 63.2 170 25.9
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 6.4e-08 62.8 170 25.9
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 6.4e-08 62.8 126 27.0
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 8.3e-08 62.4 163 29.4
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 1.1e-07 62.0 125 29.6
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.9e-07 61.2 111 31.5
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.4e-07 60.8 170 24.7
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 2.4e-07 60.8 111 31.5
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 2.4e-07 60.8 181 30.9
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 3.2e-07 60.5 183 26.8
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 7.0e-07 59.3 92 32.6
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 9.2e-07 58.9 183 32.8
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 9.2e-07 58.9 183 32.8
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 9.2e-07 58.9 181 24.3
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 9.2e-07 58.9 172 24.4
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 1.2e-06 58.5 34 82.4
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 1.6e-06 58.2 136 30.9
MCO15G679 Micromonas commoda HOM05D014140 ORTHO05D015854 1.6e-06 58.2 187 28.3
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 2.1e-06 57.8 173 25.4
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 2.1e-06 57.8 217 28.6
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 2.1e-06 57.8 186 23.1
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 2.1e-06 57.8 170 25.9
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 2.7e-06 57.4 111 31.5
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.7e-06 57.4 181 24.9
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 3.5e-06 57.0 100 31.0
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 3.5e-06 57.0 111 30.6
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 3.5e-06 57.0 172 24.4
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 3.5e-06 57.0 175 25.1
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 4.6e-06 56.6 71 39.4
FAN13G1167 Fragaria x ananassa HOM05D001602 ORTHO05D001470 4.6e-06 56.6 183 32.8
Lj2P248T46 Lonicera japonica HOM05D001602 ORTHO05D001470 4.6e-06 56.6 153 30.7
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 4.6e-06 56.6 197 29.9
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 4.6e-06 56.6 128 31.2
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 6.0e-06 56.2 222 27.5
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 6.0e-06 56.2 186 32.8
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 6.0e-06 56.2 111 31.5
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 6.0e-06 56.2 109 28.4
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 7.8e-06 55.8 216 26.9
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 7.8e-06 55.8 226 29.2
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 7.8e-06 55.8 173 24.9
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 7.8e-06 55.8 195 29.2
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 7.8e-06 55.8 93 31.2


User provided reference genes

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