Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1903 Fragaria x ananassa HOM05D017852 ORTHO05D010823 1.6e-222 775.8 400 100.0
FAN27G2266 Fragaria x ananassa HOM05D017852 ORTHO05D010823 9.0e-205 716.8 388 96.1
FvH4_7g31231 Fragaria vesca HOM05D017852 ORTHO05D010823 1.5e-188 662.9 349 96.6
FvH4_6g28332 Fragaria vesca HOM05D017852 ORTHO05D010823 2.7e-169 599.0 336 92.0
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 4.7e-161 571.6 395 79.0
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 1.4e-157 560.1 361 81.4
FvH4_1g23642 Fragaria vesca HOM05D017852 ORTHO05D010823 6.4e-110 401.7 196 98.5
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.5e-61 240.4 400 38.2
FAN06G3212 Fragaria x ananassa HOM05D004096 ORTHO05D010823 1.6e-52 211.1 336 37.8
FAN18G1971 Fragaria x ananassa HOM05D004096 ORTHO05D010823 1.9e-45 187.6 409 35.0
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 2.5e-37 160.6 334 30.5
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 1.9e-29 134.4 275 31.6
RcHm_v2.0_Chr1g0366901 Rosa chinensis HOM05D004096 ORTHO05D010823 1.2e-28 131.7 207 36.2
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 6.8e-27 125.9 265 30.6
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 9.8e-26 122.1 272 29.0
Prupe.2G063700 Prunus persica HOM05D017852 ORTHO05D012232 1.1e-24 118.6 137 40.1
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 2.2e-22 110.9 212 33.0
Potri.017G019466 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.9e-22 110.5 237 28.7
Sabra17G0002000 Salix brachista HOM05D008396 ORTHO05D018844 1.9e-21 107.8 129 40.3
Sabra17G0014800 Salix brachista HOM05D008396 ORTHO05D009908 1.9e-21 107.8 129 40.3
FAN23G0071 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.5e-21 107.5 257 26.5
FAN16G1984 Fragaria x ananassa HOM05D010142 ORTHO05D012232 3.2e-21 107.1 257 26.5
FAN14G0448 Fragaria x ananassa HOM05D010142 ORTHO05D012232 4.2e-21 106.7 227 26.9
FAN05G5253 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.2e-20 105.1 227 26.9
Ciclev10020105m.g Citrus clementina HOM05D002639 ORTHO05D010823 2.3e-19 100.9 278 25.5
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 6.8e-19 99.4 259 29.3
CANSAT35G0260 Cannabis sativa HOM05D019351 ORTHO05D018844 2.0e-18 97.8 243 27.2
RcHm_v2.0_Chr6g0268131 Rosa chinensis HOM05D010142 ORTHO05D012232 2.0e-18 97.8 258 26.4
Ciclev10031514m.g Citrus clementina HOM05D002639 ORTHO05D010823 5.7e-18 96.3 280 25.7
FAN05G4774 Fragaria x ananassa HOM05D010142 ORTHO05D012232 9.8e-18 95.5 257 25.7
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.7e-17 94.7 274 27.4
FAN25G1002 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.2e-17 94.4 297 28.3
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.3e-17 92.4 259 28.6
RcHm_v2.0_Chr3g0451001 Rosa chinensis HOM05D009478 ORTHO05D010213 8.3e-17 92.4 219 26.9
FvH4_7g10251 Fragaria vesca HOM05D004096 ORTHO05D029602 9.2e-16 89.0 212 29.2
FvH4_2g09470 Fragaria vesca HOM05D004096 ORTHO05D010213 1.6e-15 88.2 244 27.0
FvH4_2g25151 Fragaria vesca HOM05D004096 ORTHO05D010213 2.7e-15 87.4 242 26.9
FAN13G2842 Fragaria x ananassa HOM05D009478 ORTHO05D010213 2.7e-15 87.4 246 25.6
FvH4_3g37244 Fragaria vesca HOM05D004096 ORTHO05D010213 3.5e-15 87.0 292 26.0
FAN02G3705 Fragaria x ananassa HOM05D010142 ORTHO05D012232 4.5e-15 86.7 217 24.9
FAN23G2567 Fragaria x ananassa HOM05D009478 ORTHO05D010213 4.5e-15 86.7 251 25.9
FAN01G2101 Fragaria x ananassa HOM05D009478 ORTHO05D010213 5.9e-15 86.3 252 25.8
RcHm_v2.0_Chr2g0162601 Rosa chinensis HOM05D004096 ORTHO05D010823 5.9e-15 86.3 168 32.1
FvH4_6g40321 Fragaria vesca HOM05D004096 ORTHO05D010213 7.8e-15 85.9 216 28.2
FAN07G1300 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.0e-14 85.5 271 26.2
FAN17G0441 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.0e-14 85.5 294 25.5
FvH4_4g16060 Fragaria vesca HOM05D009478 ORTHO05D010213 1.3e-14 85.1 263 26.6
FAN14G0071 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.7e-14 84.7 171 32.2
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 2.3e-14 84.3 200 30.5
FvH4_2g27931 Fragaria vesca HOM05D004096 ORTHO05D029602 2.9e-14 84.0 212 28.3
FAN03G2350 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.9e-14 84.0 265 26.0
CANSAT64G0311 Cannabis sativa HOM05D009769 ORTHO05D010823 3.8e-14 83.6 193 29.5
Nn3g19359 Nelumbo nucifera HOM05D002639 ORTHO05D003094 3.8e-14 83.6 244 26.2
CANSAT01G1470 Cannabis sativa HOM05D019351 ORTHO05D018844 5.0e-14 83.2 137 35.8
FAN28G1618 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.0e-14 83.2 171 32.2
CANSAT01G0411 Cannabis sativa HOM05D009769 ORTHO05D010823 6.6e-14 82.8 193 29.0
FAN08G1236 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.6e-14 82.8 306 25.2
FAN17G2733 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.1e-13 82.0 152 34.2
FvH4_6g40680 Fragaria vesca HOM05D004096 ORTHO05D010213 1.5e-13 81.6 227 27.3
FAN04G1460 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.5e-13 81.6 171 32.2
FAN03G1232 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.5e-13 80.9 244 27.0
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 2.5e-13 80.9 180 33.3
Dinv17345 Davidia involucrata HOM05D008396 ORTHO05D000898 3.3e-13 80.5 144 33.3
FAN24G2093 Fragaria x ananassa HOM05D004096 ORTHO05D029602 4.3e-13 80.1 171 32.2
CANSAT56G2158 Cannabis sativa HOM05D009769 ORTHO05D010823 7.3e-13 79.3 168 31.0
FAN13G0415 Fragaria x ananassa HOM05D007993 ORTHO05D000898 7.3e-13 79.3 158 32.3
FAN26G1459 Fragaria x ananassa HOM05D007993 ORTHO05D012371 7.3e-13 79.3 238 27.7
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 1.2e-12 78.6 233 29.6
RcHm_v2.0_Chr1g0345471 Rosa chinensis HOM05D004096 ORTHO05D010823 1.2e-12 78.6 165 31.5
FAN19G1351 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.6e-12 78.2 158 32.3
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 2.1e-12 77.8 156 32.1
FAN18G1768 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.1e-12 77.8 233 27.5
RcHm_v2.0_Chr4g0396211 Rosa chinensis HOM05D009478 ORTHO05D010213 2.1e-12 77.8 264 24.2
Nn3g19361 Nelumbo nucifera HOM05D002639 ORTHO05D003094 2.8e-12 77.4 231 25.5
FAN27G2741 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.6e-12 77.0 171 31.6
FAN20G0479 Fragaria x ananassa HOM05D004096 ORTHO05D025475 4.7e-12 76.6 246 26.0
GSVIVG01022680001 Vitis vinifera HOM05D010670 ORTHO05D013864 8.0e-12 75.9 243 25.9
FAN09G2456 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.0e-11 75.5 285 24.2
FAN23G1079 Fragaria x ananassa HOM05D007993 ORTHO05D012371 1.0e-11 75.5 238 27.7
CANSAT21G2496 Cannabis sativa HOM05D009769 ORTHO05D010823 1.4e-11 75.1 289 25.6
FAN05G1459 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.4e-11 75.1 148 29.1
FAN13G2044 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.4e-11 75.1 250 26.0
FAN17G2488 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.8e-11 74.7 173 28.3
GSVIVG01014620001 Vitis vinifera HOM05D007651 ORTHO05D013864 1.8e-11 74.7 219 28.3
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 2.3e-11 74.3 137 29.2
Dinv07236 Davidia involucrata HOM05D008396 ORTHO05D000898 3.0e-11 73.9 145 33.8
CANSAT78G1808 Cannabis sativa HOM05D009769 ORTHO05D010823 4.0e-11 73.6 213 27.7
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 4.0e-11 73.6 244 28.7
FAN28G1208 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.8e-11 72.8 103 36.9
FAN13G3102 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.9e-11 72.4 250 25.6
FAN28G0966 Fragaria x ananassa HOM05D007993 ORTHO05D000898 8.9e-11 72.4 273 24.2
FAN22G1171 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.5e-10 71.6 149 28.2
QL10p051876 Quercus lobata HOM05D022192 ORTHO05D009908 1.5e-10 71.6 250 24.8
Manes.10G138200 Manihot esculenta HOM05D000009 ORTHO05D000008 2.0e-10 71.2 226 28.8
Nn3g19362 Nelumbo nucifera HOM05D002639 ORTHO05D008631 2.0e-10 71.2 218 27.1
Manes.10G112309 Manihot esculenta HOM05D000009 ORTHO05D000008 2.6e-10 70.9 238 28.6
CANSAT25G3518 Cannabis sativa HOM05D009769 ORTHO05D010823 3.4e-10 70.5 159 30.8
CANSAT25G1316 Cannabis sativa HOM05D014696 ORTHO05D010823 7.5e-10 69.3 147 27.2
RcHm_v2.0_Chr3g0478081 Rosa chinensis HOM05D004096 ORTHO05D000898 9.8e-10 68.9 244 25.0
COL.COLO4_15720 Corchorus olitorius HOM05D056761 ORTHO05D009908 1.3e-09 68.6 143 34.3
FAN03G1820 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.3e-09 68.6 147 30.6
FAN05G3432 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.7e-09 68.2 145 28.3
FAN25G3308 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.7e-09 68.2 145 28.3
GSVIVG01018225001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.7e-09 68.2 147 31.3
GSVIVG01012273001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.2e-09 67.8 147 32.0
QL09p039396 Quercus lobata HOM05D022192 ORTHO05D009908 2.9e-09 67.4 158 32.3
FvH4_6g07180 Fragaria vesca HOM05D011469 ORTHO05D014217 3.7e-09 67.0 136 30.1
FAN05G1382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.7e-09 67.0 234 28.6
FAN18G3521 Fragaria x ananassa HOM05D011469 ORTHO05D014217 3.7e-09 67.0 165 31.5
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 3.7e-09 67.0 182 31.3
QL08p032772 Quercus lobata HOM05D022192 ORTHO05D009908 4.9e-09 66.6 149 30.2
GSVIVG01005673001 Vitis vinifera HOM05D008451 ORTHO05D009908 4.9e-09 66.6 147 31.3
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 6.4e-09 66.2 352 20.7
GSVIVG01003489001 Vitis vinifera HOM05D008451 ORTHO05D009908 8.3e-09 65.9 148 31.1
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 1.1e-08 65.5 231 25.1
FAN02G1861 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.1e-08 65.5 119 31.1
FAN26G1477 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.1e-08 65.5 154 28.6
GSVIVG01025899001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.1e-08 65.5 147 31.3
GSVIVG01038481001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.1e-08 65.5 147 32.0
FAN28G1999 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.4e-08 65.1 138 31.2
GSVIVG01022672001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.4e-08 65.1 147 29.9
Dinv19544 Davidia involucrata HOM05D008396 ORTHO05D000898 1.8e-08 64.7 140 35.7
GSVIVG01000313001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.8e-08 64.7 147 30.6
GSVIVG01000319001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.8e-08 64.7 147 31.3
FvH4_4g07721 Fragaria vesca HOM05D004096 ORTHO05D010213 2.4e-08 64.3 138 27.5
GSVIVG01030359001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.4e-08 64.3 147 30.6
FvH4_2g27910 Fragaria vesca HOM05D004096 ORTHO05D025475 3.2e-08 63.9 137 29.9
GSVIVG01023574001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.2e-08 63.9 147 30.6
GSVIVG01034661001 Vitis vinifera HOM05D008451 ORTHO05D009908 3.2e-08 63.9 147 29.9
VMungo1127G0057 Vigna mungo HOM05D008141 ORTHO05D008631 4.1e-08 63.5 142 28.2
GSVIVG01021857001 Vitis vinifera HOM05D008451 ORTHO05D009908 4.1e-08 63.5 148 30.4
FAN13G0573 Fragaria x ananassa HOM05D011469 ORTHO05D014217 5.4e-08 63.2 165 30.9
EL10Ac6g13669 Beta vulgaris HOM05D001292 ORTHO05D001202 7.0e-08 62.8 204 26.5
GSVIVG01030778001 Vitis vinifera HOM05D008451 ORTHO05D009908 7.0e-08 62.8 147 29.9
GSVIVG01037305001 Vitis vinifera HOM05D008451 ORTHO05D009908 7.0e-08 62.8 147 30.6
Hund25343 Selenicereus undatus HOM05D001292 ORTHO05D001202 9.2e-08 62.4 214 25.2
GSVIVG01024189001 Vitis vinifera HOM05D008451 ORTHO05D009908 9.2e-08 62.4 147 32.0
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 1.2e-07 62.0 154 31.2
Medtr4g040020 Medicago truncatula HOM05D009725 ORTHO05D007788 1.2e-07 62.0 151 27.2
GSVIVG01001944001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.2e-07 62.0 147 29.9
FAN09G4395 Fragaria x ananassa HOM05D004096 ORTHO05D025475 1.6e-07 61.6 135 28.1
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 1.6e-07 61.6 181 28.7
VMungo1309G2316 Vigna mungo HOM05D008141 ORTHO05D008631 1.6e-07 61.6 121 30.6
GSVIVG01010182001 Vitis vinifera HOM05D008451 ORTHO05D009908 1.6e-07 61.6 147 29.9
FAN04G0203 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.0e-07 61.2 120 28.3
RcHm_v2.0_Chr7g0189601 Rosa chinensis HOM05D010142 ORTHO05D012232 2.0e-07 61.2 107 29.9
GSVIVG01010705001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.0e-07 61.2 147 29.9
GSVIVG01032145001 Vitis vinifera HOM05D008451 ORTHO05D009908 2.0e-07 61.2 139 29.5
CANSAT80G2744 Cannabis sativa HOM05D009769 ORTHO05D010823 2.7e-07 60.8 113 33.6
FAN20G2711 Fragaria x ananassa HOM05D011469 ORTHO05D014217 2.7e-07 60.8 165 29.1
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 3.5e-07 60.5 141 32.6
Prupe.4G261000 Prunus persica HOM05D066118 ORTHO05D050597 4.6e-07 60.1 326 24.8
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 5.9e-07 59.7 146 28.8
Dinv24489 Davidia involucrata HOM05D008396 ORTHO05D000898 5.9e-07 59.7 166 29.5
arahy.Tifrunner.gnm1.ann1.KEH6R9 Arachis hypogaea HOM05D008486 ORTHO05D010657 1.0e-06 58.9 162 27.2
COL.COLO4_07542 Corchorus olitorius HOM05D030435 ORTHO05D013856 1.0e-06 58.9 89 37.1
arahy.Tifrunner.gnm1.ann1.YY8UWK Arachis hypogaea HOM05D008486 ORTHO05D010657 1.3e-06 58.5 180 26.7
MELO3C033961.2 Cucumis melo HOM05D010240 ORTHO05D011271 1.3e-06 58.5 141 27.7
FAN09G2654 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.3e-06 58.5 173 24.9
Nn4g22805 Nelumbo nucifera HOM05D001292 ORTHO05D001202 1.7e-06 58.2 291 27.5
FAN16G0995 Fragaria x ananassa HOM05D010969 ORTHO05D015656 2.3e-06 57.8 133 27.8
VMungo1383G1806 Vigna mungo HOM05D012259 ORTHO05D008631 3.0e-06 57.4 228 21.9
Os04g0639700 Oryza sativa ssp. japonica HOM05D046285 ORTHO05D049920 3.9e-06 57.0 141 29.1
FvH4_4g10124 Fragaria vesca HOM05D007993 ORTHO05D000898 5.0e-06 56.6 171 26.3
arahy.Tifrunner.gnm1.ann1.4WBN6F Arachis hypogaea HOM05D008486 ORTHO05D010657 6.6e-06 56.2 98 30.6
FvH4_3g31810 Fragaria vesca HOM05D008674 ORTHO05D012371 6.6e-06 56.2 212 23.1
GSVIVG01030850001 Vitis vinifera HOM05D008451 ORTHO05D009908 6.6e-06 56.2 130 30.0
FAN10G4083 Fragaria x ananassa HOM05D010969 ORTHO05D015656 8.6e-06 55.8 138 25.4
FAN16G2434 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.6e-06 55.8 160 30.6


User provided reference genes

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