Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.4e-49 198.4 88 100.0
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 3.4e-40 167.9 76 97.4
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.4e-40 167.9 76 97.4
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.4e-40 167.9 76 97.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.4e-40 167.9 76 97.4
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 3.4e-40 167.9 76 97.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.2e-38 161.4 76 92.1
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.2e-38 161.4 76 92.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 3.2e-38 161.4 76 92.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 3.5e-37 157.9 75 90.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 3.5e-37 157.9 75 90.7
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 6.0e-37 157.1 76 89.5
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.9e-35 152.1 76 86.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 4.3e-35 151.0 72 88.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.3e-34 149.4 76 85.5
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.8e-34 148.3 76 82.9
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 8.1e-34 146.7 76 86.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-33 146.4 76 85.5
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-33 146.4 76 85.5
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.1e-33 146.4 76 85.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.1e-33 146.4 76 85.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-33 146.4 76 84.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.4e-33 146.0 76 86.8
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 1.8e-33 145.6 72 86.1
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.4e-33 145.2 76 85.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.1e-33 144.8 76 85.5
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.0e-33 143.3 73 82.2
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 9.0e-33 143.3 73 82.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.2e-32 142.9 82 78.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.5e-32 142.5 65 90.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.5e-32 142.5 65 90.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 2.0e-32 142.1 65 90.8
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.0e-32 142.1 76 82.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.0e-32 142.1 75 81.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.0e-32 142.1 76 84.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.6e-32 141.7 65 90.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.4e-32 141.4 68 85.3
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 5.8e-32 140.6 65 90.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.6e-32 140.2 65 89.2
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 7.6e-32 140.2 76 81.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 9.9e-32 139.8 72 83.3
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.3e-31 139.4 76 82.9
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.7e-31 139.0 66 87.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.2e-31 138.7 69 84.1
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.2e-31 138.7 69 84.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.2e-31 138.7 65 89.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.9e-31 138.3 73 79.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.9e-31 138.3 70 82.9
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.9e-31 138.3 70 82.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.8e-31 137.9 65 90.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.8e-31 137.9 65 90.8
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.8e-31 137.9 65 90.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.8e-31 137.9 65 89.2
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.8e-31 137.9 65 89.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 4.9e-31 137.5 66 87.9
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.9e-31 137.5 65 86.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.9e-31 137.5 65 86.2
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.9e-31 137.5 65 87.7
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.9e-31 137.5 65 89.2
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 4.9e-31 137.5 65 89.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.9e-31 137.5 68 83.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 6.4e-31 137.1 65 86.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 6.4e-31 137.1 65 86.2
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.4e-31 137.1 65 87.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.4e-31 136.7 65 86.2
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 8.4e-31 136.7 65 87.7
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.4e-31 136.7 65 86.2
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-30 136.3 65 86.2
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.1e-30 136.3 65 89.2
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.1e-30 136.3 65 89.2
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.4e-30 136.0 69 79.7
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.4e-30 136.0 64 87.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.4e-30 136.0 65 84.6
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-30 136.0 75 77.3
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.4e-30 136.0 65 87.7
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.9e-30 135.6 65 86.2
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.9e-30 135.6 61 91.8
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.9e-30 135.6 65 87.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.9e-30 135.6 73 79.5
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 2.5e-30 135.2 65 84.6
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.5e-30 135.2 65 84.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.2e-30 134.8 76 80.3
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.2e-30 134.8 76 80.3
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-30 134.4 65 87.7
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-30 134.4 65 87.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.2e-30 134.4 65 86.2
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.2e-30 134.4 65 86.2
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.5e-30 134.0 65 86.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 7.1e-30 133.7 65 83.1
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 7.1e-30 133.7 64 84.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 9.3e-30 133.3 65 84.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 9.3e-30 133.3 65 84.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.3e-30 133.3 76 78.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 9.3e-30 133.3 65 84.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.1e-29 132.1 65 84.6
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.1e-29 132.1 65 86.2
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.7e-29 131.7 65 83.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.7e-29 131.7 65 83.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.7e-29 131.7 65 83.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.5e-29 131.3 75 73.3
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.0e-29 130.6 66 80.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 6.0e-29 130.6 76 78.9
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.0e-28 129.8 80 73.8
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.0e-28 129.8 78 71.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-28 129.4 66 78.8
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.0e-28 128.3 60 88.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.0e-28 128.3 65 81.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-28 127.1 60 86.7
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.7e-28 127.1 67 79.1
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 6.7e-28 127.1 65 81.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 6.7e-28 127.1 65 81.5
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 6.7e-28 127.1 65 81.5
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 8.7e-28 126.7 65 78.5
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 8.7e-28 126.7 65 78.5
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 8.7e-28 126.7 65 78.5
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.1e-27 126.3 61 83.6
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.9e-27 125.6 65 80.0
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.3e-27 124.4 61 82.0
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.3e-27 124.4 61 82.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.3e-27 124.4 61 82.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.3e-27 124.4 61 82.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 4.3e-27 124.4 64 79.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 7.4e-27 123.6 61 82.0
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 7.4e-27 123.6 61 82.0
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 7.4e-27 123.6 61 82.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 7.4e-27 123.6 61 82.0
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 7.4e-27 123.6 61 82.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 9.6e-27 123.2 67 79.1
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.3e-26 122.9 60 81.7
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.1e-26 122.1 61 80.3
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.7e-26 121.3 72 68.1
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.2e-26 120.6 59 83.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-25 119.8 67 76.1
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.4e-25 119.4 65 80.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.0e-24 115.5 67 77.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.4e-24 114.8 60 75.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 7.1e-22 107.1 68 66.2
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.3e-22 106.7 60 71.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.6e-21 105.9 53 79.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.3e-20 102.8 51 80.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.3e-20 102.1 60 68.3
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 5.1e-20 100.9 55 67.3
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.7e-20 100.5 50 82.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.6e-13 77.8 34 94.1
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.6e-13 77.8 34 94.1
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 4.6e-13 77.8 34 94.1
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.4e-12 76.3 39 79.5
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 8.8e-12 73.6 34 88.2
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 3.3e-11 71.6 73 49.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.3e-10 69.7 73 46.6
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-09 66.6 27 96.3
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.5e-08 62.8 44 50.0
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.4e-06 56.2 31 71.0


User provided reference genes

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