Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-103 380.2 201 100.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.0e-103 380.2 201 100.0
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.0e-103 377.9 201 99.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-99 365.9 199 97.5
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.8e-97 359.4 199 95.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.6e-56 223.4 198 55.6
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.3e-55 220.3 199 55.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 4.3e-54 215.3 188 62.8
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.6e-53 213.4 200 56.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 3.1e-52 209.1 200 54.0
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 5.2e-52 208.4 198 55.6
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 6.8e-52 208.0 200 54.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 8.9e-52 207.6 198 55.1
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 3.4e-51 205.7 192 58.9
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.8e-51 204.9 198 54.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.8e-51 204.9 201 52.2
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 9.8e-51 204.1 200 53.5
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.7e-50 203.4 198 55.6
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.9e-50 202.6 198 50.5
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.4e-49 200.3 198 50.0
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.4e-49 200.3 199 54.3
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.9e-49 199.9 198 51.0
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.2e-49 199.1 198 53.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 3.5e-48 195.7 198 52.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.3e-47 193.7 198 49.5
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.7e-47 193.4 198 52.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 2.3e-47 193.0 198 52.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.3e-47 193.0 200 52.5
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.0e-47 191.8 198 51.0
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 5.0e-47 191.8 201 49.3
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 8.6e-47 191.0 107 95.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.5e-46 190.3 200 51.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.9e-46 189.9 200 51.0
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.3e-46 189.1 198 50.5
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.6e-46 188.3 107 93.5
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 5.6e-46 188.3 201 46.3
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.2e-45 187.2 198 50.5
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.1e-44 184.1 184 50.0
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 8.9e-44 181.0 198 46.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.3e-42 177.2 201 47.3
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.1e-41 174.1 199 48.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.9e-41 173.3 199 45.7
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 3.2e-41 172.6 199 45.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 5.4e-41 171.8 214 47.2
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 7.0e-41 171.4 87 97.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 7.0e-41 171.4 199 46.7
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 6.0e-40 168.3 201 45.8
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.9e-39 165.6 198 43.4
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 7.3e-38 161.4 201 44.3
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.6e-37 160.2 198 40.4
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.1e-37 159.8 198 40.9
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 8.1e-37 157.9 87 88.5
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.4e-36 157.1 271 38.4
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.3e-36 156.4 190 44.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.0e-36 155.6 198 39.9
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 6.8e-36 154.8 198 40.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.8e-36 154.8 199 41.2
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.6e-35 152.9 198 41.4
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 2.6e-35 152.9 198 38.9
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 9.9e-35 151.0 107 75.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.3e-34 150.6 202 46.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.2e-32 144.1 193 38.9
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.5e-30 137.1 196 37.8
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.6e-29 132.5 199 36.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.6e-29 132.5 198 34.3
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 8.1e-29 131.3 198 39.9
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.1e-28 131.0 194 40.2
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 6.8e-28 128.3 198 38.9
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.6e-27 126.3 197 38.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.4e-27 125.9 198 36.4
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.4e-27 125.9 198 36.4
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.1e-25 120.9 198 34.3
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 2.4e-25 119.8 190 35.8
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 3.2e-25 119.4 107 57.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.2e-24 117.5 107 56.1
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 6.0e-24 115.2 144 43.8
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 5.1e-23 112.1 107 58.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 6.6e-23 111.7 167 38.9
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.1e-22 110.9 201 35.8
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.9e-22 110.2 183 38.8
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 5.6e-22 108.6 201 35.3
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 9.6e-22 107.8 201 35.8
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 8.1e-21 104.8 206 35.9
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.0e-20 102.4 94 52.1
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 4.0e-20 102.4 148 41.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 9.0e-20 101.3 198 32.8
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.2e-19 100.9 107 50.5
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.2e-19 100.9 107 52.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 2.6e-19 99.8 107 46.7
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.4e-19 99.0 107 49.5
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 5.8e-19 98.6 107 50.5
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.9e-18 96.3 113 47.8
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 51.4
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.9e-18 95.5 107 51.4
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.4e-18 94.7 107 49.5
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 8.4e-18 94.7 108 50.9
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 2.4e-17 93.2 107 44.9
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.2e-17 92.8 56 75.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 9.3e-17 91.3 163 36.2
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.1e-16 90.1 107 47.7
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.7e-16 89.7 107 47.7
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 3.0e-15 86.3 74 59.5
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 3.0e-15 86.3 59 64.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 3.9e-15 85.9 107 43.9
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 8.7e-15 84.7 107 44.9
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.5e-14 84.0 97 47.4
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.5e-14 83.2 81 48.1
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 2.5e-14 83.2 60 58.3
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.5e-14 83.2 137 33.6
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 5.6e-14 82.0 107 41.1
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 5.6e-14 82.0 57 70.2
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 5.6e-14 82.0 68 54.4
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-14 82.0 56 62.5
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 7.3e-14 81.6 86 43.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 9.6e-14 81.3 81 46.9
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 9.6e-14 81.3 56 60.7
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 2.1e-13 80.1 107 43.0
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 4.8e-13 79.0 113 40.7
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.8e-13 79.0 80 52.5
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.2e-13 78.6 61 59.0
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.1e-12 77.8 122 41.8
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-12 77.4 80 51.2
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 3.1e-12 76.3 60 53.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 4.0e-12 75.9 52 67.3
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 4.0e-12 75.9 52 67.3
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 5.3e-12 75.5 91 36.3
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.9e-12 75.1 80 50.0
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 6.9e-12 75.1 197 26.9
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.0e-11 73.6 90 46.7
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 2.0e-11 73.6 171 29.2
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.5e-11 72.4 97 41.2
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 4.5e-11 72.4 165 32.7
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.3e-10 70.9 59 59.3
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.2e-10 70.1 87 41.4
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.4e-10 68.2 72 52.8
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-09 67.4 151 31.1
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 1.4e-09 67.4 73 45.2
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-09 65.9 131 31.3
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.1e-08 63.5 107 35.5
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 3.5e-08 62.8 187 24.6
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.5e-08 62.8 107 36.4
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 6.0e-08 62.0 63 50.8
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.3e-07 60.8 107 35.5
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.8e-07 60.5 108 37.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 6.7e-07 58.5 98 39.8
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-06 57.8 102 36.3
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.5e-06 57.4 98 39.8
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.5e-06 56.6 103 36.9
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.3e-06 56.2 105 32.4
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 7.4e-06 55.1 65 46.2
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 9.6e-06 54.7 65 46.2


User provided reference genes

Program Settings