Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.7e-48 195.7 99 100.0
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.2e-44 183.0 99 93.9
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 2.6e-44 181.8 99 92.9
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 2.6e-44 181.8 97 93.8
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 2.5e-39 165.2 99 84.8
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 7.5e-20 100.5 106 56.6
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 4.1e-18 94.7 97 55.7
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 4.6e-17 91.3 90 53.3
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 1.7e-16 89.4 95 54.7
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 5.0e-16 87.8 95 52.6
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 2.5e-15 85.5 95 49.5
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 2.5e-15 85.5 97 48.5
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 3.3e-15 85.1 95 53.7
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 4.3e-15 84.7 95 46.3
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 7.3e-15 84.0 95 50.5
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 9.5e-15 83.6 94 55.3
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 2.8e-14 82.0 97 52.6
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 2.8e-14 82.0 97 47.4
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 4.7e-14 81.3 95 46.3
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 6.2e-14 80.9 95 49.5
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 1.4e-13 79.7 75 53.3
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 5.2e-13 77.8 95 49.5
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 6.8e-13 77.4 97 51.5
Rhsim08G0244000 Rhododendron simsii HOM05D008314 ORTHO05D010369 1.5e-12 76.3 103 41.7
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 3.4e-12 75.1 92 48.9
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 4.4e-12 74.7 98 42.9
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 5.8e-12 74.3 87 49.4
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 7.5e-12 73.9 96 45.8
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 9.9e-12 73.6 96 46.9
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 1.7e-11 72.8 99 44.4
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 1.7e-11 72.8 95 44.2
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 2.2e-11 72.4 96 44.8
ClCG09G001340 Citrullus lanatus HOM05D008314 ORTHO05D010369 2.9e-11 72.0 95 46.3
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 3.7e-11 71.6 67 55.2
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 3.7e-11 71.6 97 45.4
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 3.7e-11 71.6 86 43.0
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 4.9e-11 71.2 100 42.0
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 4.9e-11 71.2 95 46.3
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 6.4e-11 70.9 100 42.0
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 6.4e-11 70.9 87 43.7
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 8.3e-11 70.5 95 48.4
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 8.3e-11 70.5 96 47.9
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 1.1e-10 70.1 75 46.7
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 1.1e-10 70.1 85 44.7
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 1.4e-10 69.7 85 48.2
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 1.4e-10 69.7 83 43.4
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 1.9e-10 69.3 95 41.1
CiPaw.01G212100 Carya illinoinensis HOM05D008314 ORTHO05D010369 1.6e-09 66.2 102 42.2
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 1.6e-09 66.2 39 74.4
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 3.5e-09 65.1 95 45.3
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 7.8e-09 63.9 93 45.2
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 1.0e-08 63.5 94 34.0
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 1.0e-08 63.5 89 42.7
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 1.3e-08 63.2 35 68.6
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 3.0e-08 62.0 94 35.1
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 3.9e-08 61.6 33 69.7
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 8.6e-08 60.5 55 47.3
Zm00001eb019440 Zea mays HOM05D008314 ORTHO05D010369 9.5e-07 57.0 68 36.8
Os03g0400700 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 1.2e-06 56.6 84 40.5
SEGI_18497 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 1.6e-06 56.2 41 53.7
Zm00001eb182560 Zea mays HOM05D008314 ORTHO05D010369 3.6e-06 55.1 33 66.7
SEGI_24113 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 4.7e-06 54.7 43 46.5
SEGI_22804 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 8.1e-06 53.9 41 51.2


User provided reference genes

Program Settings