Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.6e-185 650.2 335 100.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.6e-96 356.3 195 94.9
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.4e-94 350.5 196 93.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-94 350.5 196 93.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.2e-94 347.8 194 93.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.3e-79 300.8 201 83.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 3.2e-78 296.2 190 83.7
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 5.2e-73 278.9 191 79.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.7e-68 263.8 197 75.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.6e-66 257.3 194 71.1
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.6e-66 256.1 194 70.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-65 253.4 190 72.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.1e-65 253.1 200 70.5
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-64 250.8 200 70.0
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.2e-63 246.9 191 71.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.9e-63 246.5 211 66.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.9e-63 245.7 191 68.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-62 243.8 190 71.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.9e-62 243.8 192 68.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.6e-61 240.7 192 69.3
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.1e-61 240.4 197 68.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.5e-61 239.6 190 70.0
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.5e-61 239.6 190 70.0
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.5e-61 239.6 193 69.9
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.5e-61 239.6 193 69.9
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.5e-61 239.6 189 70.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.8e-61 238.4 190 69.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.8e-61 238.4 190 69.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.0e-60 236.5 190 69.5
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.6e-60 235.3 190 70.5
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.1e-59 234.6 193 67.9
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.5e-59 233.4 196 66.8
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.5e-59 233.4 193 67.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.3e-59 233.0 196 67.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.3e-59 232.6 196 65.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 9.6e-59 231.5 197 65.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.2e-58 231.1 191 65.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.1e-58 230.3 196 65.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.8e-58 229.9 200 63.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.6e-58 229.6 199 64.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.5e-56 224.2 196 64.3
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 7.6e-56 221.9 188 64.4
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.7e-55 220.7 191 61.8
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.7e-55 220.7 199 60.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.9e-55 219.9 203 62.1
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.9e-55 219.9 188 66.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 8.4e-55 218.4 199 60.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 8.4e-55 218.4 192 60.4
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.2e-54 216.5 191 60.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 3.2e-54 216.5 191 59.2
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 4.2e-54 216.1 185 60.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.4e-54 215.7 204 62.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 9.3e-54 214.9 185 61.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.2e-53 214.5 191 59.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.2e-53 214.5 199 61.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.7e-53 213.4 200 60.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.5e-53 213.0 188 61.2
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.5e-53 213.0 192 61.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-53 212.6 212 56.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.6e-53 212.6 200 58.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.6e-53 212.6 192 60.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 6.0e-53 212.2 199 59.8
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 7.8e-53 211.8 203 62.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.0e-52 211.5 197 60.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.0e-52 211.5 197 60.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.3e-52 211.1 206 58.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.3e-52 211.1 188 61.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.0e-52 209.9 192 57.8
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.0e-52 209.9 200 59.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.9e-52 209.5 219 55.3
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.6e-52 208.8 186 58.1
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 8.7e-52 208.4 229 55.5
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.1e-51 208.0 193 57.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-51 207.6 185 60.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.5e-51 207.6 185 60.5
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.5e-51 206.8 185 60.5
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 5.6e-51 205.7 204 57.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 7.3e-51 205.3 185 58.9
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 9.6e-51 204.9 200 59.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 9.6e-51 204.9 189 63.0
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 9.6e-51 204.9 203 59.1
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.6e-51 204.9 200 58.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.3e-50 204.5 200 58.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.6e-50 204.1 200 58.5
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.6e-50 203.0 193 57.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.6e-50 203.0 199 58.8
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 6.2e-50 202.2 203 57.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.1e-49 201.4 205 56.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.4e-49 201.1 190 57.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-49 200.7 203 57.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.2e-48 198.0 218 53.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.0e-48 197.2 214 51.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 3.4e-48 196.4 193 57.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.6e-48 195.3 197 56.9
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 9.9e-48 194.9 187 56.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 9.9e-48 194.9 185 58.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.7e-47 194.1 210 54.3
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.4e-47 192.2 204 57.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-47 192.2 187 62.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.4e-46 191.0 204 54.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.9e-46 190.7 206 52.9
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.2e-46 189.9 184 57.6
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.6e-45 187.6 145 67.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.1e-45 187.2 160 60.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.1e-45 187.2 196 52.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.7e-45 186.8 204 53.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.0e-44 184.9 204 54.4
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-44 184.9 142 66.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.8e-44 184.1 188 56.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.0e-44 183.3 208 53.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.7e-44 182.2 200 53.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-43 181.4 201 52.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-42 177.9 137 69.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.8e-42 176.0 182 54.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 6.2e-42 175.6 180 55.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.1e-41 174.9 193 52.8
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.0e-41 172.9 130 68.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.5e-35 153.7 211 44.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.7e-34 149.8 200 43.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 5.3e-33 146.0 194 43.3
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.9e-33 145.6 199 43.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.5e-32 144.4 131 54.2
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.5e-32 144.4 230 39.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.6e-32 143.7 224 42.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.4e-32 143.3 118 64.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 4.5e-32 142.9 162 45.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.2e-31 140.6 119 62.2
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.5e-31 139.0 187 42.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.4e-30 137.9 113 61.1
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.1e-29 134.0 134 47.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.7e-29 133.7 197 39.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 6.0e-29 132.5 113 57.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.8e-28 131.0 194 42.8
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.3e-26 124.8 115 50.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 8.2e-26 122.1 106 62.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.3e-25 119.4 193 44.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.9e-25 119.0 106 61.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.5e-24 117.9 120 45.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 7.6e-24 115.5 92 52.2
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 8.5e-23 112.1 103 58.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.4e-22 108.6 187 36.9
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.6e-21 107.8 117 45.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.8e-20 104.4 131 39.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.9e-20 103.2 192 37.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.1e-20 102.8 183 39.9
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 98.2 98 45.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.2e-18 97.4 128 39.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-17 95.1 130 39.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.1e-17 93.6 101 57.4
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 4.5e-16 89.7 203 34.0
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 5.9e-16 89.4 98 57.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.0e-15 88.6 102 45.1
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.3e-12 77.4 107 44.9
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.8e-12 75.5 174 36.8
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 7.0e-09 65.9 77 51.9
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.5e-08 64.7 77 53.2
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 5.0e-07 59.7 86 48.8


User provided reference genes

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