Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.9e-182 641.3 323 100.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 2.9e-177 625.2 324 98.1
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.1e-176 623.2 324 98.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.4e-176 620.9 324 97.5
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 3.1e-163 578.6 324 91.7
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 7.3e-157 557.4 296 95.9
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 3.3e-133 478.8 325 76.9
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 1.5e-117 426.8 327 69.7
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 6.3e-116 421.4 306 71.9
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.2e-114 417.2 320 68.8
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 2.0e-114 416.4 334 68.3
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.3e-113 413.7 316 69.0
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 3.2e-112 409.1 313 68.7
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 7.2e-112 407.9 328 68.3
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 7.2e-112 407.9 316 67.7
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 1.2e-111 407.1 319 65.8
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.6e-111 406.8 328 68.0
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 7.9e-111 404.4 312 67.9
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 1.0e-110 404.1 322 67.4
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.4e-110 403.7 322 65.2
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 5.2e-110 401.7 319 67.4
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 8.8e-110 401.0 255 78.0
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 8.8e-110 401.0 319 69.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.5e-109 400.2 325 68.3
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.5e-109 400.2 325 68.3
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 2.6e-109 399.4 320 65.6
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.6e-109 399.4 324 66.4
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.6e-109 399.4 319 67.1
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 5.7e-109 398.3 293 70.0
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 7.4e-109 397.9 319 66.5
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 7.4e-109 397.9 268 77.6
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 9.7e-109 397.5 323 65.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 9.7e-109 397.5 327 66.1
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.8e-108 396.0 336 64.3
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 4.8e-108 395.2 328 66.2
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 5.3e-107 391.7 300 67.3
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 7.0e-107 391.3 288 70.5
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 7.7e-106 387.9 317 64.7
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.0e-105 387.5 327 63.9
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.3e-105 387.1 319 65.8
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.7e-105 386.7 313 66.1
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 2.2e-105 386.3 319 64.3
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 8.5e-105 384.4 258 74.8
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 4.2e-104 382.1 282 68.8
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 4.2e-104 382.1 325 65.2
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 2.7e-103 379.4 313 65.5
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.0e-102 377.5 309 64.7
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.0e-102 377.5 316 65.8
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 6.7e-102 374.8 326 63.8
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.5e-101 373.6 351 59.0
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.0e-101 373.2 311 63.3
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 4.1e-99 365.5 311 63.7
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 5.3e-99 365.2 275 67.6
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 7.0e-99 364.8 256 71.9
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 1.6e-98 363.6 318 63.8
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 2.0e-98 363.2 318 63.8
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 2.0e-98 363.2 314 63.4
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 2.7e-98 362.8 321 65.4
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 5.9e-98 361.7 318 63.5
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 1.7e-97 360.1 252 71.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.9e-97 359.4 314 62.4
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 2.9e-97 359.4 293 65.9
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 3.8e-97 359.0 269 70.3
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 1.5e-96 357.1 313 62.0
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.9e-96 356.7 291 67.4
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 3.2e-96 355.9 305 63.0
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 7.2e-96 354.8 238 72.3
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 7.2e-96 354.8 288 64.6
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 9.4e-96 354.4 321 61.7
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 9.4e-96 354.4 317 60.3
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.2e-95 354.0 313 61.7
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.6e-95 353.6 252 70.6
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 2.7e-95 352.8 318 60.7
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 6.1e-95 351.7 322 59.6
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 8.0e-95 351.3 315 61.6
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 8.0e-95 351.3 318 61.9
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 2.3e-94 349.7 317 58.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 3.0e-94 349.4 284 66.2
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 4.0e-94 349.0 348 57.5
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 1.5e-93 347.1 321 59.2
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 1.5e-93 347.1 321 59.2
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 4.4e-93 345.5 256 71.5
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.2e-92 343.2 291 61.2
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 2.8e-92 342.8 316 57.9
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.4e-91 340.5 316 57.6
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.8e-91 340.1 319 59.2
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 2.4e-91 339.7 270 66.7
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 5.4e-91 338.6 197 83.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 9.1e-91 337.8 284 65.1
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.7e-89 333.6 223 73.5
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 3.2e-88 329.3 309 56.3
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.1e-87 326.6 214 75.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.6e-85 319.7 303 57.8
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.8e-78 297.0 176 81.8
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 4.4e-77 292.4 175 82.9
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 2.9e-76 289.7 224 66.1
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 2.4e-75 286.6 292 55.5
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 7.0e-75 285.0 278 58.3
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 6.6e-73 278.5 261 58.6
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.6e-72 275.4 186 72.6
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 2.7e-66 256.5 234 60.3
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 2.8e-63 246.5 199 57.8
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 3.1e-62 243.0 221 59.7
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 4.4e-61 239.2 208 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 2.2e-60 236.9 197 59.4
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.5e-56 224.2 228 56.6
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.7e-52 210.7 210 51.4
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 2.9e-52 209.9 251 46.6
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.5e-42 176.4 164 54.9
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 5.3e-38 162.5 231 40.7
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.5e-37 161.0 125 61.6
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 8.4e-36 155.2 235 38.7
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 3.1e-30 136.7 96 70.8
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.5e-29 134.4 91 73.6
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.9e-28 129.4 86 72.1
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 1.1e-27 128.3 120 50.0
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 6.7e-25 119.0 61 93.4
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 8.2e-23 112.1 75 76.0
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.8e-09 67.8 37 83.8
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 8.8e-09 65.5 147 32.0


User provided reference genes

Program Settings