Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.4e-178 627.9 325 100.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.7e-101 371.7 453 52.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.7e-100 369.0 453 52.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.9e-100 368.6 453 51.9
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 7.0e-99 364.8 453 52.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 2.7e-90 336.3 210 85.2
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.8e-85 318.5 427 49.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.7e-84 315.8 188 90.4
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 8.6e-81 304.7 210 75.7
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 6.8e-78 295.0 246 67.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 8.9e-78 294.7 246 66.7
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-75 287.7 174 90.2
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 2.1e-66 256.9 209 64.6
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 5.6e-64 248.8 210 62.9
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 4.8e-63 245.7 200 64.0
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 4.0e-62 242.7 211 62.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 6.9e-62 241.9 211 62.1
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 2.6e-61 240.0 209 60.8
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 3.2e-59 233.0 211 60.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 7.1e-59 231.9 208 59.1
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 4.6e-58 229.2 211 59.7
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 1.5e-56 224.2 209 58.4
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 2.5e-56 223.4 207 58.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 4.3e-56 222.6 220 56.4
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 2.0e-53 213.8 257 47.9
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 3.4e-53 213.0 215 56.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.7e-52 210.7 210 54.8
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.2e-52 210.3 202 57.9
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.9e-52 209.1 209 56.0
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 8.4e-52 208.4 210 54.3
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 8.4e-52 208.4 184 61.4
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 9.3e-51 204.9 211 51.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 9.3e-51 204.9 250 48.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.0e-50 202.2 216 52.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.0e-50 202.2 207 53.6
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 1.0e-49 201.4 211 51.7
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.0e-49 201.4 210 51.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 1.8e-49 200.7 205 52.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 1.8e-49 200.7 211 52.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 6.7e-49 198.7 211 52.6
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 1.5e-48 197.6 258 46.5
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.9e-48 197.2 211 50.7
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 7.4e-48 195.3 202 52.0
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 9.6e-48 194.9 211 51.7
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 3.7e-47 193.0 213 49.8
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 6.2e-47 192.2 283 42.8
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 8.1e-47 191.8 211 50.7
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 1.8e-46 190.7 203 51.7
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 1.8e-46 190.7 218 52.3
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 9.0e-46 188.3 220 52.7
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 1.5e-45 187.6 220 49.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 1.5e-45 187.6 201 53.2
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 2.6e-45 186.8 258 46.1
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 3.4e-45 186.4 204 50.0
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 1.0e-44 184.9 295 41.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 2.5e-43 180.3 235 48.5
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 3.2e-43 179.9 240 45.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 4.2e-43 179.5 183 53.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 4.2e-43 179.5 183 53.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 7.1e-43 178.7 203 48.8
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 2.7e-42 176.8 209 47.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 6.0e-42 175.6 209 47.4
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 2.3e-41 173.7 250 42.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 5.1e-41 172.6 236 44.9
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 1.1e-40 171.4 270 39.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 1.5e-40 171.0 247 40.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 2.5e-40 170.2 210 47.1
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 5.7e-40 169.1 251 41.0
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 1.6e-39 167.5 236 44.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 1.6e-39 167.5 205 47.3
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 1.6e-39 167.5 236 44.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 1.6e-39 167.5 236 44.5
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 1.6e-39 167.5 205 47.3
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 4.8e-39 166.0 205 46.8
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 6.3e-39 165.6 209 45.9
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 6.3e-39 165.6 200 43.5
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 6.3e-39 165.6 213 45.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 4.1e-38 162.9 208 46.2
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.1e-38 162.9 205 47.3
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 4.1e-38 162.9 258 41.5
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.2e-36 157.1 184 49.5
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 5.0e-36 156.0 208 44.7
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 6.5e-36 155.6 205 45.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.2e-35 153.3 352 36.1
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 3.6e-34 149.8 256 36.3
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 3.0e-33 146.7 200 43.0
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.3e-32 143.3 172 44.8
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 7.4e-32 142.1 205 42.0
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.2e-31 140.6 252 36.9
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 2.2e-31 140.6 207 41.1
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.1e-30 135.2 143 53.1
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.6e-29 133.7 245 37.1
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 6.5e-28 129.0 270 32.2
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 3.3e-24 116.7 121 54.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 5.3e-22 109.4 202 35.6
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.8e-20 103.2 194 33.0
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 1.1e-19 101.7 200 32.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.2e-19 99.8 196 33.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.8e-17 94.4 51 92.2
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 1.8e-17 94.4 170 34.1
FAN05G1074 Fragaria x ananassa HOM05D001841 ORTHO05D001767 9.7e-16 88.6 48 91.7
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 5.9e-13 79.3 93 43.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.0e-09 68.6 51 64.7
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-09 67.0 50 64.0
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.7e-07 61.2 210 27.6
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 4.1e-06 56.6 51 51.0
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.3e-06 56.2 68 44.1


User provided reference genes

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