Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.0e-91 340.1 175 100.0
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 1.9e-90 335.9 175 98.3
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.9e-90 335.9 175 98.3
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.8e-88 329.3 175 97.1
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 1.8e-64 249.6 175 74.3
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 1.7e-54 216.5 175 63.4
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.7e-54 216.5 175 63.4
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 4.4e-47 191.8 157 61.1
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 1.3e-46 190.3 158 58.2
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.6e-44 183.3 157 57.3
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 3.3e-42 175.6 157 57.3
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 5.2e-32 141.7 156 46.2
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 7.0e-29 131.3 156 48.1
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 9.2e-29 131.0 98 64.3
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 2.7e-28 129.4 161 40.4
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 4.6e-28 128.6 157 47.1
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 3.9e-27 125.6 161 39.1
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.6e-27 124.4 148 43.2
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 2.8e-25 119.4 148 41.2
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.8e-24 116.7 154 39.6
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 3.1e-24 115.9 148 40.5
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 5.2e-24 115.2 163 39.9
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.6e-23 112.8 145 40.7
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 2.6e-23 112.8 141 39.7
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 3.4e-23 112.5 145 40.0
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.4e-23 112.1 145 40.7
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 4.4e-23 112.1 80 67.5
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 4.4e-23 112.1 146 42.5
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 2.9e-22 109.4 149 40.3
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.7e-22 109.0 141 40.4
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 3.7e-22 109.0 153 38.6
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 6.4e-22 108.2 150 38.7
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 8.3e-22 107.8 161 37.9
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 5.4e-21 105.1 158 38.0
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 9.2e-21 104.4 152 41.4
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 9.2e-21 104.4 125 44.0
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 1.3e-19 100.5 155 40.0
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 1.7e-19 100.1 125 42.4
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 3.0e-19 99.4 146 39.7
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 1.1e-18 97.4 150 37.3
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 7.3e-18 94.7 146 39.0
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 9.5e-18 94.4 148 35.1
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 1.2e-17 94.0 145 35.9
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.1e-16 90.9 133 40.6
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 3.4e-15 85.9 142 34.5
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 4.4e-15 85.5 160 33.1
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 7.6e-15 84.7 154 32.5
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 1.3e-14 84.0 146 35.6
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.7e-14 83.6 133 33.1
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.9e-14 82.8 94 45.7
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.9e-14 82.8 97 43.3
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.9e-13 80.1 118 35.6
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.4e-13 79.7 134 34.3
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 2.1e-12 76.6 106 36.8
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 2.7e-12 76.3 149 32.9
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 7.8e-12 74.7 158 31.0
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 1.7e-11 73.6 158 32.3
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 3.9e-11 72.4 158 32.9
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 8.6e-11 71.2 144 30.6
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.5e-10 70.5 153 33.3
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 1.9e-10 70.1 124 31.5
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 7.3e-10 68.2 96 32.3
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.2e-09 67.4 146 32.2
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 1.6e-09 67.0 115 28.7
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 1.6e-09 67.0 115 28.7
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 1.6e-09 67.0 163 31.9
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 2.8e-09 66.2 144 29.9
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 3.6e-09 65.9 129 28.7
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 4.7e-09 65.5 105 34.3
A06p06100 Brassica napus HOM05D013394 ORTHO05D009712 8.1e-09 64.7 144 29.9
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 1.1e-08 64.3 144 27.8
Peaxi162Scf01623g00014 Petunia axillaris HOM05D009933 ORTHO05D012084 1.1e-08 64.3 144 23.6
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 2.4e-08 63.2 144 28.5
BraA06t23823Z Brassica rapa HOM05D013394 ORTHO05D009712 2.4e-08 63.2 144 29.2
SGA_v2.0_scaffold48G17932 Striga asiatica HOM05D008339 ORTHO05D009712 2.4e-08 63.2 110 29.1
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 3.1e-08 62.8 148 27.7
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 3.1e-08 62.8 110 29.1
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 3.1e-08 62.8 110 29.1
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 4.0e-08 62.4 145 28.3
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 6.8e-08 61.6 141 25.5
BcaC05g24789 Brassica carinata HOM05D013394 ORTHO05D009712 8.9e-08 61.2 144 27.8
BolC5t29492H Brassica oleracea HOM05D013394 ORTHO05D009712 8.9e-08 61.2 144 27.8
Actinidia21379 Actinidia chinensis HOM05D001578 ORTHO05D001207 1.2e-07 60.8 152 27.0
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 1.2e-07 60.8 93 34.4
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 2.0e-07 60.1 106 28.3
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 2.0e-07 60.1 121 28.9
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.0e-07 60.1 128 26.6
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.6e-07 59.7 120 25.8
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 3.4e-07 59.3 120 27.5
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 4.4e-07 58.9 120 32.5
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 7.6e-07 58.2 118 25.4
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 9.9e-07 57.8 131 25.2
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 9.9e-07 57.8 126 23.0
Thecc.01G128300 Theobroma cacao HOM05D004113 ORTHO05D005233 1.7e-06 57.0 95 34.7
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 2.2e-06 56.6 100 29.0
QL04p033186 Quercus lobata HOM05D003146 ORTHO05D001819 2.2e-06 56.6 124 29.0
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 2.9e-06 56.2 151 28.5
Oeu060879.1 Olea europaea HOM05D009933 ORTHO05D012084 2.9e-06 56.2 157 26.8
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 2.9e-06 56.2 94 30.9
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 3.8e-06 55.8 151 28.5
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 3.8e-06 55.8 116 28.4
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 3.8e-06 55.8 94 28.7
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 4.9e-06 55.5 106 30.2
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 4.9e-06 55.5 77 32.5
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 4.9e-06 55.5 77 32.5
Duzib147G1472 Durio zibethinus HOM05D004113 ORTHO05D005233 6.4e-06 55.1 95 30.5
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 6.4e-06 55.1 76 30.3
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 8.4e-06 54.7 126 31.0
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 8.4e-06 54.7 82 32.9
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 8.4e-06 54.7 77 32.5


User provided reference genes

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