Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 0.0e+00 1119.4 567 100.0
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 0.0e+00 1115.9 567 99.6
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 8.3e-305 1049.7 568 93.1
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.0e-282 975.3 507 97.8
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.0e-274 948.7 577 84.9
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 3.3e-261 904.8 576 81.4
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.1e-255 885.6 575 79.5
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.4e-251 872.1 572 78.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 8.4e-249 863.6 571 77.8
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 7.1e-248 860.5 572 78.3
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.2e-247 859.8 570 77.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.6e-247 859.4 580 76.2
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 7.9e-247 857.1 572 76.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 3.0e-246 855.1 497 85.3
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 5.1e-246 854.4 573 75.6
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 4.3e-245 851.3 506 83.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.3e-245 851.3 507 88.2
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.8e-243 845.9 504 83.7
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.6e-242 842.0 570 75.8
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 4.5e-242 841.3 575 75.7
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.8e-242 840.9 442 97.1
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.4e-241 837.4 571 75.0
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 8.4e-241 837.0 538 79.0
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.2e-239 833.2 503 81.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 9.6e-237 823.5 575 73.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.1e-236 822.4 571 74.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 4.8e-236 821.2 504 81.9
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.4e-235 818.9 498 80.5
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.4e-235 818.9 564 73.9
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 3.4e-234 815.1 568 74.8
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 3.2e-232 808.5 503 80.5
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.7e-231 805.4 565 71.9
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 3.5e-231 805.1 566 71.0
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 6.0e-231 804.3 564 73.8
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.3e-230 803.1 489 81.0
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 6.7e-230 800.8 570 71.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.1e-229 800.0 576 72.4
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 2.5e-229 798.9 566 71.7
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 4.3e-229 798.1 570 70.9
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 5.7e-229 797.7 571 71.8
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 7.4e-229 797.3 571 71.3
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.3e-228 796.6 508 78.0
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 1.3e-228 796.6 509 77.4
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.6e-228 796.2 572 70.8
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 3.7e-228 795.0 451 86.9
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.7e-228 795.0 498 79.3
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 8.2e-228 793.9 502 79.1
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.1e-227 793.5 497 79.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.8e-227 792.7 557 73.2
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 6.9e-227 790.8 580 70.0
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.0e-227 790.4 559 72.8
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 9.0e-227 790.4 493 78.9
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.2e-226 790.0 574 71.1
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.5e-226 789.6 571 71.8
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 4.5e-226 788.1 498 78.5
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.3e-225 786.6 481 80.0
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.4e-224 783.1 547 74.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 3.2e-224 781.9 508 76.8
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 5.5e-224 781.2 471 80.0
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 7.2e-224 780.8 477 79.7
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.1e-223 779.2 536 72.8
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.1e-223 779.2 550 73.3
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.4e-222 776.5 491 77.2
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 5.1e-222 774.6 492 77.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 6.7e-222 774.2 502 76.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 6.7e-222 774.2 502 76.3
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 4.3e-221 771.5 553 70.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.7e-221 771.2 565 70.6
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.7e-220 769.6 492 77.8
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.7e-220 769.6 507 74.0
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.7e-220 769.6 491 77.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 3.7e-220 768.5 492 77.6
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 4.8e-220 768.1 551 69.7
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.1e-219 766.9 492 77.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.8e-219 766.1 492 77.2
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.3e-219 764.6 520 75.2
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 5.3e-219 764.6 571 69.4
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 6.9e-219 764.2 492 76.4
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 9.1e-219 763.8 491 75.8
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 5.9e-218 761.1 492 76.0
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 7.7e-218 760.8 559 69.6
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.0e-217 758.1 556 68.9
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.5e-217 757.7 556 68.7
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.5e-216 755.7 463 79.5
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 7.2e-216 754.2 550 69.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.0e-214 748.8 549 69.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.0e-213 746.1 503 73.6
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 5.7e-213 744.6 503 73.6
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.4e-211 740.0 543 69.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.4e-211 739.2 510 73.5
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.0e-210 736.1 547 69.5
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 7.7e-210 734.2 495 72.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.1e-208 730.3 555 67.6
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.2e-208 728.8 564 67.6
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.9e-206 721.8 569 66.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.2e-206 721.5 497 74.8
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.6e-202 709.1 496 70.2
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 5.9e-202 708.0 558 65.8
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 4.4e-197 691.8 568 66.2
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 4.5e-194 681.8 409 79.5
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.5e-192 674.9 486 66.7
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 1.2e-191 673.7 568 64.3
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.2e-191 673.7 486 67.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.7e-191 672.5 486 67.1
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 4.7e-191 671.8 448 77.5
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 8.0e-191 671.0 479 72.4
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.0e-190 669.1 541 61.2
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.4e-182 643.7 506 63.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 1.3e-180 637.1 505 62.2
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 2.8e-175 619.4 461 65.1
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 6.1e-175 618.2 500 63.8
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 3.4e-173 612.5 492 65.7
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.3e-164 583.9 472 57.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.5e-160 569.7 473 58.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.3e-160 569.3 473 59.0
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 8.9e-158 561.2 488 58.4
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.3e-156 554.7 456 66.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 4.9e-148 528.9 382 72.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.1e-142 511.1 508 51.2
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.0e-137 494.6 320 78.1
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.5e-133 480.7 334 73.4
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 7.4e-128 461.8 507 48.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.6e-122 444.1 501 48.7
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 7.0e-78 295.8 226 68.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.1e-62 245.4 146 81.5
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 2.5e-59 234.2 474 31.4
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 5.2e-41 173.3 115 72.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.5e-35 154.5 431 26.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 8.4e-31 139.4 72 88.9
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 7.8e-29 132.9 64 100.0
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 4.4e-24 117.1 80 76.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 3.8e-15 87.4 491 26.1
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 3.8e-15 87.4 477 23.7
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 6.5e-07 60.1 28 96.4


User provided reference genes

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