Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1381 Fragaria x ananassa HOM05D002613 ORTHO05D003140 2.8e-86 322.0 173 100.0
FAN14G3278 Fragaria x ananassa HOM05D002613 ORTHO05D003140 3.9e-64 248.4 161 87.0
FAN05G3619 Fragaria x ananassa HOM05D002613 ORTHO05D003140 6.7e-64 247.7 160 86.9
FvH4_6g24800 Fragaria vesca HOM05D002613 ORTHO05D003140 1.1e-63 246.9 161 87.0
FAN02G3333 Fragaria x ananassa HOM05D002613 ORTHO05D003140 2.8e-62 242.3 161 85.7
RcHm_v2.0_Chr3g0484591 Rosa chinensis HOM05D002613 ORTHO05D003140 2.7e-41 172.6 172 60.5
Prupe.7G049400 Prunus persica HOM05D002613 ORTHO05D003140 2.8e-30 136.0 195 48.2
MD12G1089400 Malus domestica HOM05D002613 ORTHO05D003140 4.2e-26 122.1 199 44.2
QL07p004674 Quercus lobata HOM05D002613 ORTHO05D003140 1.7e-22 110.2 216 40.3
Duzib128G0525 Durio zibethinus HOM05D002613 ORTHO05D003140 4.5e-20 102.1 144 46.5
Dinv30285 Davidia involucrata HOM05D002613 ORTHO05D003140 1.5e-18 97.1 192 39.6
Thecc.05G144500 Theobroma cacao HOM05D002613 ORTHO05D003140 1.9e-18 96.7 151 39.7
COL.COLO4_21284 Corchorus olitorius HOM05D002613 ORTHO05D003140 2.5e-18 96.3 179 41.3
Haze_19756 Corylus avellana HOM05D002613 ORTHO05D003140 9.4e-18 94.4 171 43.9
Ciclev10004493m.g Citrus clementina HOM05D002613 ORTHO05D003140 1.2e-17 94.0 142 44.4
TWI74G1367 Tripterygium wilfordii HOM05D002613 ORTHO05D003140 2.7e-17 92.8 159 44.0
CANSAT80G1658 Cannabis sativa HOM05D002613 ORTHO05D003140 4.7e-17 92.0 179 39.7
Potri.006G044700 Populus trichocarpa HOM05D002613 ORTHO05D003140 1.8e-16 90.1 194 37.6
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 2.3e-16 89.7 141 44.7
Gohir.D09G115900 Gossypium hirsutum HOM05D002613 ORTHO05D003140 2.3e-16 89.7 190 37.9
Sabra06G0030900 Salix brachista HOM05D002613 ORTHO05D003140 6.8e-16 88.2 197 40.1
CANSAT80G1176 Cannabis sativa HOM05D002613 ORTHO05D003140 8.8e-16 87.8 179 40.8
arahy.Tifrunner.gnm1.ann1.EM8ZKT Arachis hypogaea HOM05D002613 ORTHO05D003140 3.4e-15 85.9 166 39.8
Lalb_Chr25g0287031 Lupinus albus HOM05D002613 ORTHO05D003140 4.4e-15 85.5 169 42.6
Medtr7g090640 Medicago truncatula HOM05D002613 ORTHO05D003140 4.4e-15 85.5 165 41.2
VMungo1383G0401 Vigna mungo HOM05D002613 ORTHO05D003140 4.4e-15 85.5 183 44.8
ClCG08G003410 Citrullus lanatus HOM05D002613 ORTHO05D003140 1.3e-14 84.0 137 38.7
MELO3C011684.2 Cucumis melo HOM05D002613 ORTHO05D003140 1.7e-14 83.6 130 42.3
Psat3g075680 Pisum sativum HOM05D002613 ORTHO05D003140 1.7e-14 83.6 132 48.5
CiPaw.09G043000 Carya illinoinensis HOM05D002613 ORTHO05D003140 3.7e-14 82.4 179 37.4
Atru.chr1.1250 Acer truncatum HOM05D002613 ORTHO05D003140 4.8e-14 82.0 165 36.4
Glyma.03G132000 Glycine max HOM05D002613 ORTHO05D003140 4.8e-14 82.0 165 41.8
Gorai.006G134200 Gossypium raimondii HOM05D002613 ORTHO05D003140 4.8e-14 82.0 192 36.5
PGR031G3576 Punica granatum HOM05D002613 ORTHO05D003140 4.8e-14 82.0 197 35.0
arahy.Tifrunner.gnm1.ann1.TE5HJ9 Arachis hypogaea HOM05D002613 ORTHO05D003140 6.3e-14 81.6 158 40.5
Cpa.g.sc5.216 Carica papaya HOM05D002613 ORTHO05D003140 6.3e-14 81.6 176 37.5
Gohir.A09G119700 Gossypium hirsutum HOM05D002613 ORTHO05D003140 6.3e-14 81.6 194 35.1
Lj1g0008941 Lotus japonicus HOM05D002613 ORTHO05D003140 8.3e-14 81.3 186 41.4
Manes.08G054900 Manihot esculenta HOM05D002613 ORTHO05D003140 8.3e-14 81.3 191 33.5
Sed0007029 Sechium edule HOM05D002613 ORTHO05D003140 1.1e-13 80.9 171 33.9
Oeu042057.1 Olea europaea HOM05D002613 ORTHO05D003140 3.1e-13 79.3 166 36.7
Phvul.001G128000 Phaseolus vulgaris HOM05D002613 ORTHO05D003140 4.1e-13 79.0 183 39.3
GSVIVG01033559001 Vitis vinifera HOM05D002613 ORTHO05D003140 4.1e-13 79.0 158 38.6
Eucgr.A02292 Eucalyptus grandis HOM05D002613 ORTHO05D003140 1.2e-12 77.4 135 37.8
Aa31LG10G12090 Aethionema arabicum HOM05D002613 ORTHO05D003140 5.9e-12 75.1 129 39.5
THA.LOC104803285 Tarenaya hassleriana HOM05D002613 ORTHO05D003140 7.7e-12 74.7 195 33.8
C08p32490 Brassica napus HOM05D002613 ORTHO05D003140 1.3e-11 73.9 135 37.0
AL5G38670 Arabidopsis lyrata HOM05D002613 ORTHO05D003140 1.7e-11 73.6 155 33.5
BolC8t50865H Brassica oleracea HOM05D002613 ORTHO05D003140 1.7e-11 73.6 126 38.1
BcaC07g40067 Brassica carinata HOM05D002613 ORTHO05D003140 2.2e-11 73.2 120 40.0
CsaV3_6G004050 Cucumis sativus L. HOM05D002613 ORTHO05D003140 2.9e-11 72.8 145 33.8
Lj1C1121G13 Lonicera japonica HOM05D002613 ORTHO05D003140 3.8e-11 72.4 161 39.1
Actinidia39191 Actinidia chinensis HOM05D002613 ORTHO05D003140 5.0e-11 72.0 117 39.3
A09p50120 Brassica napus HOM05D002613 ORTHO05D003140 5.0e-11 72.0 122 41.8
BraA09t40463Z Brassica rapa HOM05D002613 ORTHO05D003140 5.0e-11 72.0 122 41.8
CARHR167360 Cardamine hirsuta HOM05D002613 ORTHO05D003140 1.5e-10 70.5 148 38.5
Lj1A1118T30 Lonicera japonica HOM05D002613 ORTHO05D034270 1.9e-10 70.1 146 41.8
arahy.Tifrunner.gnm1.ann1.9G159B Arachis hypogaea HOM05D002613 ORTHO05D003140 2.5e-10 69.7 169 36.7
Carub.0005s2400 Capsella rubella HOM05D002613 ORTHO05D003140 4.2e-10 68.9 166 32.5
arahy.Tifrunner.gnm1.ann1.5ZDB9J Arachis hypogaea HOM05D002613 ORTHO05D003140 7.2e-10 68.2 169 36.7
AUR62030392 Chenopodium quinoa HOM05D002613 ORTHO05D003140 9.4e-10 67.8 192 33.9
AUR62026142 Chenopodium quinoa HOM05D002613 ORTHO05D003140 1.6e-09 67.0 183 33.9
Sc13g0001450 Simmondsia chinensis HOM05D002613 ORTHO05D003140 2.1e-09 66.6 177 31.6
Ca_08422_v3 Cicer arietinum L. HOM05D002613 ORTHO05D003140 2.7e-09 66.2 166 39.8
Thhalv10005825m.g Eutrema salsugineum HOM05D002613 ORTHO05D003140 8.0e-09 64.7 134 33.6
vmacro21953 Vaccinium macrocarpon HOM05D002613 ORTHO05D003140 1.4e-08 63.9 119 41.2
SGA_v2.0_scaffold5G03102 Striga asiatica HOM05D002613 ORTHO05D003140 2.3e-08 63.2 110 37.3
TAR375G1154 Trochodendron aralioides HOM05D002613 ORTHO05D003140 3.0e-08 62.8 165 36.4
MSTRG.17075 Avicennia marina HOM05D002613 ORTHO05D003140 4.0e-08 62.4 156 31.4
BcaC07g40038 Brassica carinata HOM05D002613 ORTHO05D003140 4.0e-08 62.4 83 44.6
CSS0039271 Camellia sinensis var. sinensis HOM05D002613 ORTHO05D003140 5.2e-08 62.0 116 39.7
Ah.13g076720 Amaranthus hybridus HOM05D002613 ORTHO05D003140 6.8e-08 61.6 178 32.6
Rhsim03G0031300 Rhododendron simsii HOM05D002613 ORTHO05D003140 6.8e-08 61.6 129 35.7
Nn1g01897 Nelumbo nucifera HOM05D002613 ORTHO05D003140 4.4e-07 58.9 159 32.7
EL10Ac3g07172 Beta vulgaris HOM05D002613 ORTHO05D003140 7.5e-07 58.2 190 33.2
DCAR_020534 Daucus carota HOM05D002613 ORTHO05D003140 7.5e-07 58.2 163 33.7
Aqoxy3G02142 Aquilegia oxysepala HOM05D002613 ORTHO05D003140 1.7e-06 57.0 33 60.6
HanXRQChr04g0121301 Helianthus annuus HOM05D002613 ORTHO05D003140 2.2e-06 56.6 74 43.2
PSO063G3737 Papaver somniferum HOM05D002613 ORTHO05D003140 2.8e-06 56.2 108 37.0
HanXRQChr04g0124961 Helianthus annuus HOM05D002613 ORTHO05D003140 3.7e-06 55.8 91 39.6
TPR.G32749 Trifolium pratense HOM05D002613 ORTHO05D003140 3.7e-06 55.8 113 39.8
Os06g0498900 Oryza sativa ssp. japonica HOM05D002613 ORTHO05D003140 6.3e-06 55.1 85 37.6
Migut.B01406 Erythranthe guttata HOM05D002613 ORTHO05D003140 8.3e-06 54.7 107 38.3


User provided reference genes

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