Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.2e-196 688.7 336 100.0
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 4.2e-139 498.4 296 83.8
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 2.5e-131 472.6 302 79.5
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.2e-131 471.9 307 79.5
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.0e-129 465.7 308 78.2
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.5e-124 448.0 297 77.4
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 8.0e-114 414.5 306 68.6
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 3.6e-106 389.0 307 66.8
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 5.1e-52 209.1 270 40.0
FvH4_6g52753 Fragaria vesca HOM05D008315 ORTHO05D009452 8.1e-50 201.8 175 64.0
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.3e-44 184.5 311 39.2
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.5e-43 180.3 333 36.9
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 2.4e-41 173.7 266 39.5
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.4e-33 147.1 303 35.6
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.2e-32 144.8 311 34.4
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.5e-30 137.1 120 69.2
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 1.8e-28 131.0 249 32.1
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 3.0e-28 130.2 280 30.4
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 3.9e-28 129.8 226 37.2
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.9e-28 129.8 169 50.9
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.1e-27 128.3 84 81.0
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 7.4e-27 125.6 252 31.7
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.1e-25 121.7 268 31.3
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 2.4e-25 120.6 257 31.5
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.2e-24 118.2 99 67.7
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.2e-24 118.2 237 30.8
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.5e-24 117.9 237 30.8
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.5e-24 116.3 247 29.1
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 4.5e-24 116.3 193 32.6
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.8e-23 113.2 109 60.6
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 3.8e-23 113.2 252 26.2
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 2.5e-22 110.5 257 25.7
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 3.2e-22 110.2 280 27.9
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.2e-22 110.2 76 78.9
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.5e-22 109.4 236 29.7
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 2.1e-21 107.5 164 38.4
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 4.7e-21 106.3 197 34.0
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.3e-20 104.0 282 27.7
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.0e-20 103.6 282 27.7
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.1e-20 102.8 151 33.8
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.1e-19 101.7 229 28.4
FvH4_2g13531 Fragaria vesca HOM05D008315 ORTHO05D009452 3.3e-19 100.1 55 81.8
FAN11G3924 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.4e-19 99.0 56 89.3
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 7.4e-19 99.0 199 31.7
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.7e-18 96.7 225 28.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.7e-18 96.7 222 27.9
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 6.3e-18 95.9 201 32.8
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 6.3e-18 95.9 201 32.8
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.4e-17 94.0 240 26.7
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.5e-16 91.3 250 27.2
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.2e-15 87.4 245 25.3
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.8e-15 86.7 245 24.9
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 6.5e-15 85.9 292 24.3
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.4e-14 82.0 99 55.6
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 4.7e-13 79.7 198 29.8
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.1e-13 79.3 234 26.9
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.0e-12 78.6 212 25.9
MBI18_g39412_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-12 78.2 176 26.7
MBI16_g34941_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.8e-12 77.8 248 25.8
Nitab4.5_0003520g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-12 77.8 180 32.2
Zm00001eb190070 Zea mays HOM05D008576 ORTHO05D000385 1.8e-12 77.8 205 25.9
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.3e-12 77.4 226 26.1
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 2.3e-12 77.4 265 27.9
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 3.0e-12 77.0 99 44.4
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 3.0e-12 77.0 126 34.9
Nitab4.5_0008492g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-12 76.6 182 30.2
Zm00001eb029070 Zea mays HOM05D008576 ORTHO05D000385 3.9e-12 76.6 257 24.1
Zm00001eb384730 Zea mays HOM05D008576 ORTHO05D000385 3.9e-12 76.6 257 24.1
Zm00001eb438630 Zea mays HOM05D008576 ORTHO05D000385 3.9e-12 76.6 257 24.1
Zm00001eb439020 Zea mays HOM05D008576 ORTHO05D000385 3.9e-12 76.6 257 24.1
Zm00001eb027370 Zea mays HOM05D008576 ORTHO05D000385 5.2e-12 76.3 257 24.1
Zm00001eb184880 Zea mays HOM05D008576 ORTHO05D000385 5.2e-12 76.3 328 22.3
Zm00001eb333630 Zea mays HOM05D008576 ORTHO05D000385 5.2e-12 76.3 257 24.1
Zm00001eb425380 Zea mays HOM05D008576 ORTHO05D000385 5.2e-12 76.3 334 23.1
EL10Ac6g14499 Beta vulgaris HOM05D001385 ORTHO05D008760 1.1e-11 75.1 322 23.9
Zm00001eb234630 Zea mays HOM05D008576 ORTHO05D000385 1.1e-11 75.1 257 23.7
Atru.chr1.767 Acer truncatum HOM05D001309 ORTHO05D000385 1.5e-11 74.7 257 23.7
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.5e-11 74.7 240 26.7
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.0e-11 74.3 255 26.7
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 2.0e-11 74.3 88 42.0
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.6e-11 73.9 260 24.2
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 3.3e-11 73.6 274 25.5
EL10Ac7g18151 Beta vulgaris HOM05D001385 ORTHO05D008760 4.4e-11 73.2 227 25.6
EL10Ac9g20910 Beta vulgaris HOM05D001385 ORTHO05D008760 4.4e-11 73.2 227 26.0
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 4.4e-11 73.2 240 30.4
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 4.4e-11 73.2 168 31.0
Zm00001eb182790 Zea mays HOM05D008576 ORTHO05D000385 4.4e-11 73.2 257 23.7
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 5.7e-11 72.8 242 25.6
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.4e-11 72.4 184 29.3
Zm00001eb390290 Zea mays HOM05D008576 ORTHO05D000385 7.4e-11 72.4 254 24.0
EL10Ac1g02023 Beta vulgaris HOM05D001385 ORTHO05D008760 2.2e-10 70.9 227 26.0
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 2.8e-10 70.5 319 22.9
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.8e-10 70.5 186 30.6
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 6.3e-10 69.3 254 25.6
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 8.2e-10 68.9 257 26.1
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.4e-09 68.2 249 24.9
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 1.8e-09 67.8 214 24.8
MBI09_g41430_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.4e-09 67.4 109 35.8
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.1e-09 66.6 180 27.2
Os10g0343500 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 7.0e-09 65.9 144 26.4
Zm00001eb308920 Zea mays HOM05D008576 ORTHO05D000385 7.0e-09 65.9 200 24.0
Zm00001eb388400 Zea mays HOM05D008576 ORTHO05D000385 7.0e-09 65.9 200 24.0
EL10Ac5g11714 Beta vulgaris HOM05D000107 ORTHO05D000062 9.1e-09 65.5 192 28.6
EL10Ac7g16607 Beta vulgaris HOM05D001385 ORTHO05D008760 1.2e-08 65.1 322 24.8
Nitab4.5_0001313g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.2e-08 65.1 158 29.7
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 3.5e-08 63.5 134 25.4
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.7e-08 62.4 233 26.2
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.7e-08 62.4 201 25.9
EL10Ac2g03126 Beta vulgaris HOM05D008595 ORTHO05D010945 2.2e-07 60.8 234 24.4
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 2.2e-07 60.8 201 26.9
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.2e-07 60.8 289 23.9
EL10Ac1g01824 Beta vulgaris HOM05D001385 ORTHO05D008760 2.9e-07 60.5 147 30.6
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 2.9e-07 60.5 162 25.9
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 2.9e-07 60.5 145 26.2
Nitab4.5_0000789g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.9e-07 60.5 188 28.2
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 2.9e-07 60.5 178 24.2
EL10Ac8g19368 Beta vulgaris HOM05D008595 ORTHO05D010945 3.8e-07 60.1 212 22.6
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.8e-07 60.1 141 27.7
TAR472G0003 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-07 60.1 216 24.5
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 6.5e-07 59.3 185 24.9
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 6.5e-07 59.3 127 27.6
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.5e-07 59.3 160 28.1
Atru.chr6.1726 Acer truncatum HOM05D001309 ORTHO05D000385 8.5e-07 58.9 252 22.2
FAN15G3221 Fragaria x ananassa HOM05D006751 ORTHO05D008710 8.5e-07 58.9 27 92.6
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 8.5e-07 58.9 123 31.7
Zm00001eb092990 Zea mays HOM05D008576 ORTHO05D000385 1.1e-06 58.5 146 26.7
Zm00001eb093010 Zea mays HOM05D008576 ORTHO05D000385 1.1e-06 58.5 146 26.7
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 1.9e-06 57.8 199 23.6
EL10Ac4g08588 Beta vulgaris HOM05D008595 ORTHO05D010945 2.5e-06 57.4 233 21.9
EL10Ac8g20153 Beta vulgaris HOM05D008595 ORTHO05D010945 3.2e-06 57.0 234 23.5
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.2e-06 57.0 242 26.0
EL10Ac5g11789 Beta vulgaris HOM05D008595 ORTHO05D010945 4.2e-06 56.6 277 23.1
EL10Ac6g14473 Beta vulgaris HOM05D008595 ORTHO05D010945 4.2e-06 56.6 277 23.1
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.2e-06 56.6 123 30.1
MBI17_g42351_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.2e-06 56.6 134 23.9
SGA_v2.0_scaffold251G45054 Striga asiatica HOM05D004615 ORTHO05D000385 4.2e-06 56.6 146 28.8
EL10Ac9g20868 Beta vulgaris HOM05D008595 ORTHO05D010945 5.5e-06 56.2 216 22.7
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.5e-06 56.2 160 26.9
Nitab4.5_0000039g0160 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.5e-06 56.2 150 30.0
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.5e-06 56.2 122 31.1
vmacro21926 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.5e-06 56.2 182 24.7
vmacro23420 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.5e-06 56.2 182 24.7
Dinv04329 Davidia involucrata HOM05D010146 ORTHO05D000385 7.2e-06 55.8 121 27.3
Dinv11732 Davidia involucrata HOM05D010146 ORTHO05D000385 7.2e-06 55.8 121 27.3
EL10Ac3g06466 Beta vulgaris HOM05D008595 ORTHO05D010945 9.4e-06 55.5 168 23.2
TAR362G0068 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.4e-06 55.5 137 26.3


User provided reference genes

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