Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.2e-238 828.6 424 100.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 3.3e-234 814.7 425 98.1
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.3e-234 814.7 425 98.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-233 812.4 425 97.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-231 805.8 425 97.4
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 5.0e-214 747.7 432 91.7
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.9e-189 666.0 437 81.9
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.1e-184 648.3 431 81.0
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 5.4e-184 647.9 431 81.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.5e-159 565.5 398 74.6
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.3e-156 557.0 429 71.1
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.7e-156 555.4 388 74.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.6e-154 549.3 435 70.8
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 7.6e-154 547.7 395 70.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.8e-153 545.4 389 72.2
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.9e-152 543.1 433 68.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.5e-151 538.9 393 71.5
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-150 537.0 432 66.7
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.3e-150 536.2 427 68.9
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 5.1e-150 535.0 430 68.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 8.7e-150 534.3 434 69.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 4.3e-149 531.9 396 68.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 5.7e-149 531.6 435 66.4
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.2e-148 529.6 432 64.8
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 6.3e-148 528.1 432 67.6
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 8.2e-148 527.7 431 66.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.4e-147 526.9 429 67.1
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 3.1e-147 525.8 389 71.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.1e-147 525.4 434 68.0
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 6.9e-147 524.6 392 69.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 9.0e-147 524.2 391 69.1
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 4.5e-146 521.9 390 70.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.0e-145 520.8 385 71.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.0e-145 520.8 383 70.8
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.2e-145 519.6 432 65.3
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.2e-145 519.6 393 71.2
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.9e-145 519.2 430 64.7
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 5.0e-145 518.5 434 65.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.0e-145 518.5 387 70.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.4e-144 516.9 389 69.2
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.4e-144 516.9 433 65.1
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.5e-144 516.2 436 66.1
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.2e-144 515.8 430 68.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.2e-144 515.4 436 65.8
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.2e-144 515.4 436 66.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 7.2e-144 514.6 430 67.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 4.6e-143 511.9 384 70.3
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-142 510.8 429 67.4
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.3e-142 509.6 386 67.1
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 9.7e-141 504.2 388 67.3
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.3e-140 503.8 387 67.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.7e-140 503.4 398 65.8
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.7e-140 502.3 436 64.7
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.8e-140 501.9 434 63.6
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 8.2e-140 501.1 384 69.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.1e-139 499.2 408 63.7
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.1e-139 499.2 432 65.5
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.1e-139 499.2 433 64.0
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.1e-139 498.8 381 69.8
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.2e-138 497.3 391 69.1
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.2e-138 497.3 429 66.9
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.5e-138 496.9 396 68.4
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.6e-138 496.1 433 64.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.7e-137 493.4 402 64.2
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.8e-137 492.3 392 66.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.1e-136 490.7 428 63.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-136 490.3 392 65.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.9e-136 490.0 436 61.9
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.5e-136 489.6 397 65.2
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 5.5e-136 488.4 436 64.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 6.1e-135 485.0 440 63.6
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.0e-134 484.2 397 65.7
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 5.1e-134 481.9 384 66.7
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.7e-133 478.4 387 66.1
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 9.7e-133 477.6 383 65.5
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.2e-132 476.5 431 62.9
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.3e-132 474.9 426 63.8
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.4e-131 473.8 384 66.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.4e-131 473.0 388 64.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.1e-131 472.6 385 65.7
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 9.1e-131 471.1 427 62.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 7.7e-130 468.0 386 65.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 7.7e-130 468.0 396 64.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.7e-129 466.8 359 67.4
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.9e-129 466.1 386 65.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.9e-129 466.1 396 64.9
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.8e-129 465.7 386 64.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-128 463.8 386 64.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.5e-128 461.8 430 60.5
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 9.4e-128 461.1 426 62.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.2e-127 460.7 384 66.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.1e-127 459.9 385 63.9
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.6e-127 459.1 426 61.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.6e-127 459.1 426 61.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 8.0e-127 458.0 387 63.3
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.8e-126 454.5 426 60.8
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.1e-125 454.1 391 62.4
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.0e-125 453.4 387 63.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 7.4e-125 451.4 442 57.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 4.1e-123 445.7 383 61.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.5e-122 442.2 445 56.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 5.9e-122 441.8 386 60.6
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.7e-122 441.4 385 62.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.9e-121 439.5 385 61.3
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 9.4e-120 434.5 388 60.8
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.2e-119 434.1 388 60.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.6e-117 426.4 394 59.1
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.3e-117 426.0 391 60.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-115 420.6 429 57.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.1e-115 419.5 319 68.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.7e-114 416.4 430 57.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-113 413.7 432 54.6
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-112 410.2 433 53.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 5.5e-112 408.7 433 54.0
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.7e-109 398.7 378 58.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.8e-108 396.4 460 53.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.8e-108 396.4 378 58.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.2e-106 391.0 386 57.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.9e-106 388.7 385 56.4
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.6e-101 373.2 310 63.9
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.0e-98 363.6 392 51.3
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.0e-94 349.4 429 50.3
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.2e-86 322.4 240 68.8
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.7e-84 316.2 337 52.8
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.6e-66 257.7 406 39.7
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.0e-65 255.0 235 55.3
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.6e-64 249.2 299 49.2
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.6e-63 246.5 237 58.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 4.0e-62 243.0 224 56.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.9e-57 226.5 204 59.8
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.6e-55 221.1 155 74.2
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.4e-51 206.1 150 74.0
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 4.6e-50 203.0 192 65.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 6.7e-49 199.1 147 76.2
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.8e-46 191.0 210 55.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.1e-42 177.6 355 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.9e-40 171.0 304 34.9
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.7e-20 104.8 114 52.6
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.7e-17 92.8 67 65.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 9.7e-16 89.0 76 57.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.2e-09 66.6 160 30.6
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 3.3e-08 63.9 36 69.4
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.4e-06 58.5 102 40.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 2.4e-06 57.8 131 35.9


User provided reference genes

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