Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-261 906.0 457 100.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.1e-258 895.2 457 99.1
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.7e-256 887.1 457 98.5
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.7e-256 887.1 457 98.7
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.3e-255 885.9 457 98.7
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 6.1e-242 840.5 461 93.5
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 3.6e-218 761.5 465 83.9
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 3.2e-214 748.4 451 84.0
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 4.6e-213 744.6 458 82.5
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.2e-207 725.7 466 79.0
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 5.6e-203 711.1 459 78.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.8e-202 708.8 460 78.7
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.8e-202 708.0 459 78.2
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 6.2e-202 707.6 460 79.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 8.1e-202 707.2 459 77.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.4e-201 705.7 459 77.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 7.6e-200 700.7 461 78.1
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 5.4e-198 694.5 460 75.9
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.7e-197 692.2 459 76.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.0e-196 690.3 473 74.6
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 5.1e-196 688.0 469 76.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.4e-193 679.1 460 76.1
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.4e-192 675.2 459 75.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.4e-190 669.8 458 74.0
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 7.1e-190 667.5 459 73.9
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 7.1e-190 667.5 459 74.7
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.6e-189 664.8 459 73.6
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 8.7e-188 660.6 477 73.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 5.6e-187 657.9 460 73.7
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.3e-186 656.8 440 76.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.6e-186 656.4 458 72.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.4e-185 652.5 460 73.7
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 3.1e-185 652.1 480 72.3
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.0e-184 649.4 459 73.6
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 4.5e-184 648.3 461 73.1
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.2e-183 646.0 459 72.8
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.4e-182 643.3 461 72.5
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.5e-182 642.5 458 71.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 7.1e-182 641.0 459 71.2
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.8e-180 636.3 475 70.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.9e-180 635.2 453 72.0
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 8.7e-180 634.0 459 71.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.5e-179 632.5 456 70.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.3e-179 632.1 494 67.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.3e-178 630.2 451 71.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.3e-178 630.2 461 70.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.1e-178 629.4 487 68.6
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.1e-178 629.4 459 71.2
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.1e-177 627.1 458 71.2
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.8e-177 626.3 458 71.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.4e-176 622.1 459 71.2
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 5.9e-176 621.3 455 70.5
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 5.9e-176 621.3 471 69.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.6e-176 620.9 452 70.8
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 7.6e-176 620.9 454 70.0
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.9e-175 619.0 459 70.6
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.4e-174 616.7 455 69.5
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.5e-174 615.9 453 71.5
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.2e-174 615.5 463 70.2
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.5e-174 614.8 458 70.7
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 7.2e-174 614.4 453 70.2
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 2.7e-173 612.5 460 69.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-173 611.7 460 69.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 6.1e-173 611.3 461 69.2
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.0e-172 610.5 463 69.3
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.3e-172 610.1 453 70.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.3e-172 609.4 453 68.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.1e-172 608.2 538 59.9
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.7e-172 607.8 461 68.5
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-171 607.1 460 68.9
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-171 607.1 455 69.2
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.5e-171 605.9 461 69.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 5.7e-171 604.7 460 69.8
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 7.4e-171 604.4 456 69.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.6e-170 603.2 449 69.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-170 602.4 453 68.7
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.6e-168 595.9 455 68.6
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-168 595.5 455 68.6
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-168 595.5 455 68.6
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.7e-167 593.2 454 68.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 3.8e-167 592.0 453 67.8
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.0e-167 591.7 430 71.4
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 6.5e-167 591.3 452 69.2
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 6.5e-167 591.3 450 67.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-166 590.1 450 66.2
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.5e-166 589.3 454 68.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 5.5e-166 588.2 453 69.3
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.6e-165 585.5 457 68.3
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 6.1e-165 584.7 455 67.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 6.1e-165 584.7 442 69.2
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.0e-164 583.9 442 69.2
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 3.0e-164 582.4 454 68.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.9e-164 582.0 458 67.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.9e-164 582.0 427 69.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-163 580.5 454 68.1
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.0e-163 579.7 458 65.7
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 5.7e-163 578.2 431 69.4
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 5.7e-163 578.2 454 68.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 7.4e-163 577.8 453 68.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 9.7e-163 577.4 451 68.5
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 9.7e-163 577.4 458 65.7
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.7e-162 576.6 452 66.2
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.8e-162 575.9 458 65.7
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 8.2e-162 574.3 463 67.2
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.2e-162 574.3 456 66.2
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.2e-162 574.3 458 66.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.1e-161 572.0 452 67.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 9.1e-161 570.9 454 67.8
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.0e-160 569.7 452 65.9
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-160 569.3 449 65.7
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 8.5e-159 564.3 422 70.9
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.1e-158 563.9 459 64.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.6e-155 552.7 453 67.1
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.7e-155 551.6 453 66.2
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 8.2e-154 547.7 453 66.4
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 5.0e-151 538.5 464 63.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.9e-150 536.6 441 66.0
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 8.0e-149 531.2 515 56.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 7.5e-147 524.6 424 67.2
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.2e-146 523.1 447 61.5
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.8e-143 512.3 430 62.1
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.5e-142 508.4 446 61.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.6e-141 506.9 420 65.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 8.3e-138 494.6 437 61.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 8.0e-133 478.0 461 57.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.3e-132 476.5 453 58.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-130 469.9 404 63.1
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.3e-127 460.7 515 53.4
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.9e-126 456.8 322 73.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.1e-125 451.8 433 55.4
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 7.5e-123 444.9 291 79.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-121 440.7 391 61.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.4e-116 424.1 456 52.2
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.3e-116 423.3 480 51.7
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.0e-116 422.5 342 66.4
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 8.3e-106 388.3 458 50.2
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.4e-100 370.9 258 73.6
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.9e-98 362.5 455 46.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.6e-87 325.5 307 60.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 8.7e-87 325.1 320 58.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 9.0e-84 315.1 469 41.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.2e-81 306.2 289 59.9
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.3e-74 284.6 197 73.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.9e-74 283.5 261 60.2
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.9e-74 282.7 213 69.5
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.4e-73 280.4 216 67.1
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.3e-73 278.5 197 70.6
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 3.9e-71 273.1 301 53.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 7.4e-70 268.9 196 69.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 8.2e-69 265.4 184 75.5
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 5.1e-63 246.1 237 57.8
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.5e-58 228.8 451 38.4
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.4e-57 225.3 158 72.8
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.6e-56 224.6 219 55.3
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.2e-50 204.1 292 44.2
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-47 194.5 120 80.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.0e-47 193.7 133 72.2
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.4e-44 184.1 174 53.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.9e-41 174.5 321 36.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-40 171.8 177 52.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.1e-40 171.0 140 61.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 4.7e-40 169.9 303 38.6
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 3.1e-36 157.1 299 36.5
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.0e-28 129.4 159 45.9
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.0e-28 129.4 76 82.9
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.0e-27 127.9 154 53.2
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 4.5e-27 126.7 114 57.0
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 8.5e-26 122.5 79 82.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 3.6e-24 117.1 125 60.0
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.8e-22 109.0 126 54.0
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.6e-19 101.7 113 59.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.0e-18 96.7 76 69.7
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.5e-14 82.8 109 47.7
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.4e-12 77.8 47 78.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.4e-12 77.8 58 67.2
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 2.9e-10 70.9 112 44.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 3.8e-10 70.5 51 68.6
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.6e-08 65.1 118 44.1
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 6.1e-08 63.2 159 32.7
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.0e-08 62.8 42 71.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 8.9e-07 59.3 61 50.8
Pp3c7_14100 Physcomitrium patens HOM05D002054 ORTHO05D004936 1.5e-06 58.5 158 32.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 7.5e-06 56.2 36 66.7


User provided reference genes

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