Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.8e-254 882.1 446 100.0
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.2e-235 818.1 447 93.3
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 4.0e-230 801.2 447 91.5
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.0e-217 758.4 430 90.5
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.4e-214 749.6 448 87.3
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 7.2e-195 684.1 457 80.3
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 1.0e-116 424.5 503 53.5
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.9e-115 420.2 496 52.6
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 4.3e-115 419.1 497 51.9
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 1.8e-89 334.0 503 46.1
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 2.4e-89 333.6 513 45.4
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 2.1e-85 320.5 507 45.6
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 9.7e-83 311.6 503 45.7
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.7e-79 300.8 515 42.5
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.7e-79 300.8 503 45.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.1e-78 298.1 502 45.0
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.9e-78 297.4 525 41.9
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.7e-77 293.5 500 43.8
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.0e-76 291.6 438 46.3
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 3.0e-76 290.0 493 43.0
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-75 288.1 501 42.3
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 5.7e-75 285.8 489 42.1
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 5.7e-75 285.8 502 43.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 5.7e-75 285.8 489 43.4
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 5.3e-73 279.3 511 44.0
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 5.9e-72 275.8 507 40.8
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.3e-71 274.6 494 41.1
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 5.0e-71 272.7 498 41.8
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.2e-69 268.1 486 41.2
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.2e-69 268.1 496 40.9
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.1e-69 267.3 496 40.7
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.7e-69 266.9 497 41.6
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 4.7e-69 266.2 499 41.9
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 8.0e-69 265.4 488 42.8
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 8.0e-69 265.4 488 42.8
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 2.3e-68 263.8 501 41.1
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 5.2e-68 262.7 450 42.0
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 9.7e-67 258.5 444 41.9
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.3e-66 258.1 518 40.3
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 2.8e-66 256.9 491 40.3
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.1e-65 255.0 460 41.5
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.8e-65 254.2 515 40.2
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 2.4e-65 253.8 522 40.2
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.5e-64 250.0 510 39.6
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 5.0e-63 246.1 463 41.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 6.5e-63 245.7 537 37.6
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.7e-61 240.4 539 38.6
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.0e-60 236.9 457 40.9
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.2e-58 230.7 475 38.3
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 6.3e-58 229.2 478 38.7
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 1.8e-57 227.6 453 38.6
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 3.1e-57 226.9 498 38.8
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 4.5e-56 223.0 500 37.8
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.2e-55 220.7 460 37.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 2.9e-55 220.3 501 36.7
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 8.5e-55 218.8 519 36.6
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 3.2e-54 216.9 498 35.5
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 7.2e-54 215.7 445 36.2
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 3.6e-53 213.4 432 37.0
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 4.7e-53 213.0 460 35.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 8.0e-53 212.2 524 35.1
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.3e-52 210.7 442 37.8
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.3e-52 210.7 442 37.8
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 2.3e-52 210.7 412 38.6
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 4.0e-52 209.9 482 35.3
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 1.2e-51 208.4 492 35.4
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.6e-51 207.2 423 36.9
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 3.4e-51 206.8 487 35.5
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 3.4e-51 206.8 475 35.4
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.2e-50 204.1 500 35.2
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 8.3e-50 202.2 461 36.2
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.8e-49 201.1 501 35.3
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 4.1e-49 199.9 459 35.1
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.5e-48 196.8 533 32.8
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.5e-48 196.4 491 35.4
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 5.9e-48 196.1 542 32.7
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.3e-47 194.1 489 32.9
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 6.6e-47 192.6 491 33.2
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 8.6e-47 192.2 488 35.0
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.1e-46 191.8 426 35.9
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 1.1e-46 191.8 429 38.0
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 5.5e-46 189.5 421 37.8
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 7.2e-46 189.1 429 35.9
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 7.2e-46 189.1 433 36.3
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.6e-45 188.0 489 35.4
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 6.8e-44 182.6 418 34.2
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 8.9e-44 182.2 446 32.7
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.5e-43 181.4 443 34.1
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.5e-43 181.4 447 34.9
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 1.5e-43 181.4 420 36.9
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 9.8e-43 178.7 418 35.2
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 9.8e-43 178.7 418 35.2
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 9.8e-43 178.7 418 35.2
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.9e-42 177.2 424 35.4
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 2.9e-42 177.2 452 35.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 3.7e-42 176.8 456 32.9
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.4e-41 174.9 424 36.1
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.4e-41 174.9 450 33.6
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.4e-41 174.9 447 33.6
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 6.6e-39 166.0 454 32.8
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 6.6e-39 166.0 485 33.6
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.3e-34 151.8 450 32.0
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.0e-28 130.2 343 34.1
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.4e-25 121.7 477 28.9
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.6e-21 108.2 391 29.2
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 6.2e-21 106.3 223 39.5
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 4.9e-18 96.7 205 35.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 5.4e-17 93.2 208 37.0
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.1e-13 81.3 141 41.8
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 2.4e-12 77.8 276 29.3
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.1e-12 77.4 200 33.0
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 2.9e-10 70.9 128 37.5
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 6.4e-10 69.7 302 28.5
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.3e-07 61.2 69 44.9
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 9.6e-06 55.8 161 31.1


User provided reference genes

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