Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-279 965.3 648 100.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-265 919.8 648 96.0
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.4e-263 912.9 648 95.8
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.3e-260 900.2 648 94.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.1e-258 894.4 648 94.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.4e-215 753.4 650 83.5
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 3.3e-140 503.1 678 47.9
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 4.9e-120 436.0 751 41.8
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.2e-104 384.0 646 41.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.0e-104 382.9 643 40.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.5e-97 361.3 648 39.2
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.7e-91 341.3 563 42.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.9e-88 330.5 591 38.6
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.7e-86 323.9 657 36.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.0e-84 317.8 641 37.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.8e-83 313.9 657 36.8
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.7e-83 313.5 645 36.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 6.1e-78 296.2 648 34.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.3e-77 294.3 654 35.5
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.3e-75 285.8 644 32.8
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.8e-74 284.6 713 35.2
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.3e-72 277.7 645 33.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 5.0e-72 276.6 665 34.3
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.7e-70 270.0 730 31.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 6.1e-70 269.6 639 32.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 6.8e-69 266.2 653 33.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 6.8e-69 266.2 650 33.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.2e-68 265.4 643 34.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.4e-68 263.8 643 35.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 7.5e-68 262.7 591 33.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.4e-66 257.7 668 33.8
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.6e-65 255.0 631 32.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.9e-64 250.8 642 32.1
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.4e-61 241.9 649 31.3
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 6.4e-59 233.0 646 32.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.7e-56 224.9 658 29.6
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.7e-56 224.9 695 35.3
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.3e-56 224.6 651 32.9
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.1e-55 222.2 488 33.8
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.1e-54 218.0 667 34.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.8e-54 217.6 404 39.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.5e-52 211.8 651 28.1
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.0e-52 211.5 468 34.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.6e-52 211.1 651 32.4
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 8.3e-51 206.1 472 32.6
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.9e-50 204.9 722 28.0
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 5.4e-50 203.4 829 29.7
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 7.0e-50 203.0 694 33.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.2e-49 202.2 650 32.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.5e-49 200.7 706 30.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.6e-49 200.3 759 27.5
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.3e-48 198.0 749 27.6
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 5.1e-48 196.8 477 32.5
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.6e-48 196.4 695 30.6
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.3e-47 193.7 774 26.4
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.1e-46 191.4 475 31.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 2.1e-46 191.4 721 27.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 3.1e-45 187.6 753 26.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.1e-45 187.6 474 33.3
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 6.8e-45 186.4 585 28.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 7.5e-44 183.0 192 49.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 4.9e-43 180.3 720 35.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.2e-42 177.6 668 37.6
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 9.2e-42 176.0 218 48.6
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 3.5e-41 174.1 218 48.2
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.0e-40 172.6 558 29.7
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.7e-40 171.8 570 28.4
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.3e-40 171.4 867 29.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.0e-40 171.0 713 35.3
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 6.6e-40 169.9 206 42.7
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 5.6e-39 166.8 699 34.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 6.2e-38 163.3 707 35.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.2e-38 163.3 720 26.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.0e-37 160.6 773 28.3
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.0e-37 160.6 553 39.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 6.8e-37 159.8 700 35.4
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.0e-36 158.3 773 27.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.6e-36 157.9 700 35.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 7.6e-36 156.4 724 36.3
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-35 155.6 224 46.0
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.7e-35 155.2 337 35.9
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.7e-35 155.2 455 29.9
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.2e-35 154.8 504 28.8
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.4e-35 153.3 710 35.5
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.1e-34 152.5 804 27.4
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 7.1e-34 149.8 550 38.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 9.2e-34 149.4 693 31.3
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.6e-33 148.7 198 43.4
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 6.0e-33 146.7 703 24.8
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 7.8e-33 146.4 693 31.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 7.8e-33 146.4 213 39.0
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.0e-32 144.4 710 35.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-31 142.5 721 35.4
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.9e-31 141.7 710 34.8
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.5e-31 141.4 672 26.3
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-31 140.2 479 28.6
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 7.3e-31 139.8 477 30.4
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.6e-30 138.7 197 43.1
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.1e-30 138.3 210 41.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 4.7e-30 137.1 658 25.8
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.0e-29 132.9 699 33.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.0e-28 131.7 213 37.6
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 6.4e-27 126.7 112 54.5
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.0e-24 119.4 690 25.1
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.1e-23 115.9 188 35.6
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.1e-23 115.9 144 40.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.1e-22 111.7 215 33.0
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.6e-22 110.9 189 37.6
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.4e-21 109.0 203 36.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.0e-21 106.3 699 31.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-20 104.0 160 40.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.6e-20 103.2 204 34.8
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.9e-20 102.8 354 26.8
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.9e-19 100.5 354 26.6
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 4.9e-19 100.5 283 37.1
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.4e-19 100.1 180 35.6
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 6.4e-19 100.1 169 37.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.4e-18 98.2 203 34.0
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.6e-17 95.5 358 36.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.7e-17 94.7 351 30.5
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.3e-16 91.7 191 34.0
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 4.3e-15 87.4 107 45.8
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 9.0e-13 79.7 194 29.9
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-12 77.4 138 38.4
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-12 77.4 138 38.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.9e-11 74.7 279 30.1
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 6.0e-09 67.0 106 38.7
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.3e-07 61.2 100 45.0
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.3e-06 59.3 94 36.2


User provided reference genes

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