Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1368.6 825 100.0
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1340.9 827 98.4
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 0.0e+00 1312.4 827 96.7
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1211.4 825 91.8
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 0.0e+00 1209.9 827 90.8
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.1e-294 1016.5 833 79.5
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 4.5e-275 951.4 828 77.1
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 2.2e-221 773.1 856 64.3
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 9.2e-212 741.1 785 64.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 8.6e-210 734.6 847 62.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 8.9e-207 724.5 858 60.3
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 1.3e-205 720.7 863 61.2
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 2.9e-205 719.5 859 61.1
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.2e-203 714.1 823 62.1
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.0e-203 713.4 860 60.8
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 7.8e-203 711.4 860 61.7
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 6.2e-200 701.8 862 60.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 8.9e-199 698.0 853 61.5
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 4.4e-198 695.7 878 60.4
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.4e-196 690.6 854 60.7
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 5.0e-194 682.2 850 60.7
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 5.0e-194 682.2 861 59.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 3.1e-191 672.9 859 58.3
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 4.9e-189 665.6 859 59.3
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 4.6e-187 659.1 854 58.2
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 6.6e-186 655.2 860 57.7
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.5e-185 654.1 823 59.5
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 3.1e-183 646.4 865 57.5
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 9.9e-182 641.3 864 57.5
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 9.9e-182 641.3 851 58.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 3.8e-181 639.4 870 50.0
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.1e-180 636.0 707 64.5
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 5.4e-180 635.6 862 55.2
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 4.6e-179 632.5 866 55.4
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 6.0e-179 632.1 794 57.7
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 3.0e-178 629.8 864 54.5
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 3.0e-178 629.8 869 54.8
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 3.0e-178 629.8 869 54.8
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.5e-177 627.5 864 56.6
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.5e-177 627.5 800 58.8
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 7.3e-177 625.2 864 54.9
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 7.3e-177 625.2 738 61.1
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 9.6e-177 624.8 842 54.4
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 9.6e-177 624.8 842 54.4
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 9.6e-177 624.8 689 64.7
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.2e-176 624.4 867 54.3
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 4.7e-176 622.5 849 56.4
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 8.1e-176 621.7 854 56.3
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.1e-175 619.8 861 57.0
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 5.2e-175 619.0 858 55.9
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 1.2e-174 617.8 859 55.3
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 2.0e-174 617.1 858 55.8
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 4.4e-174 615.9 840 55.7
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 5.8e-174 615.5 788 58.6
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 2.2e-173 613.6 794 56.9
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 3.8e-173 612.8 780 57.1
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 4.9e-173 612.5 784 50.9
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 4.9e-173 612.5 784 51.0
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 8.4e-173 611.7 773 58.5
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.2e-172 609.8 827 50.2
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.5e-171 606.3 852 49.4
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.7e-170 604.0 854 54.1
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 8.7e-170 601.7 800 58.4
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 1.1e-169 601.3 804 57.1
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 2.1e-168 597.0 832 52.9
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 5.3e-167 592.4 858 54.4
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 6.9e-167 592.0 844 54.9
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 1.5e-166 590.9 909 45.9
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 2.6e-166 590.1 865 47.6
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.7e-165 587.4 863 54.2
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.7e-165 587.4 859 49.0
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 8.4e-165 585.1 759 58.4
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.4e-164 584.3 852 54.6
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 3.2e-164 583.2 819 49.9
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 3.2e-164 583.2 857 54.5
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 7.4e-161 572.0 848 54.4
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 7.6e-158 562.0 854 52.0
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 2.2e-157 560.5 896 53.5
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 3.8e-157 559.7 828 55.0
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.9e-156 557.4 849 53.2
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 6.0e-155 552.4 865 53.6
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.0e-154 551.6 869 53.0
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.6e-152 544.3 875 46.5
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.8e-146 524.2 747 45.8
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 8.8e-130 468.8 693 53.2
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 9.1e-127 458.8 597 63.7
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.4e-122 444.9 802 42.1
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 9.4e-116 422.2 810 45.9
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 3.0e-106 390.6 522 63.2
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 8.0e-99 365.9 556 50.0
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 2.0e-89 334.7 633 36.5
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 4.3e-84 317.0 343 65.9
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.0e-81 308.1 791 42.9
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.6e-78 298.5 281 74.0
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 4.7e-75 287.0 538 54.3
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.4e-71 274.6 823 40.1
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 9.9e-65 252.7 822 38.1
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 6.4e-64 250.0 298 47.3
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 5.6e-52 210.3 230 52.2
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 7.1e-47 193.4 486 35.6
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.2e-46 192.6 236 47.9
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 5.1e-37 160.6 317 48.6
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 6.5e-32 143.7 157 45.9
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.1e-31 142.9 74 91.9
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 5.3e-26 124.0 133 49.6
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 9.0e-26 123.2 209 38.8
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.0e-21 108.2 106 50.0
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 6.3e-11 73.9 161 59.0
vmacro02472 Vaccinium macrocarpon HOM05D000001 ORTHO05D009986 8.5e-08 63.5 178 28.1
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 2.7e-06 58.5 241 26.6
VMungo1383G1120 Vigna mungo HOM05D000001 ORTHO05D009986 8.0e-06 57.0 152 28.3


User provided reference genes

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