Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0935 Fragaria x ananassa HOM05D004241 ORTHO05D026924 2.6e-43 178.3 91 100.0
FAN14G2483 Fragaria x ananassa HOM05D004241 ORTHO05D026924 8.4e-42 173.3 91 96.7
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 3.7e-37 157.9 81 100.0
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 3.1e-36 154.8 81 97.5
FAN09G0084 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.5e-35 152.5 81 97.5
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.5e-35 152.5 81 97.5
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 1.6e-29 132.5 82 85.4
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 7.1e-25 117.1 81 76.5
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 1.6e-24 115.9 81 75.3
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 4.6e-24 114.4 81 72.8
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 1.8e-23 112.5 83 72.3
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 3.3e-22 108.2 87 72.4
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 3.3e-22 108.2 87 72.4
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 3.3e-22 108.2 81 69.1
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 7.4e-22 107.1 87 71.3
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 7.4e-22 107.1 81 74.1
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 9.7e-22 106.7 81 70.4
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 9.7e-22 106.7 81 74.1
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 1.3e-21 106.3 81 66.7
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 4.8e-21 104.4 88 71.6
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 6.3e-21 104.0 92 69.6
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 8.2e-21 103.6 81 66.7
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 1.1e-20 103.2 81 70.4
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 1.1e-20 103.2 88 68.2
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 2.4e-20 102.1 82 67.1
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 3.1e-20 101.7 81 71.6
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 4.1e-20 101.3 81 59.3
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 9.0e-20 100.1 81 67.9
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 1.2e-19 99.8 82 68.3
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 2.0e-19 99.0 82 69.5
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 2.0e-19 99.0 81 69.1
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 2.0e-19 99.0 83 65.1
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 5.9e-19 97.4 81 69.1
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 7.6e-19 97.1 81 65.4
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 7.6e-19 97.1 82 62.2
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 7.6e-19 97.1 81 67.9
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.0e-18 96.7 81 65.4
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 1.7e-18 95.9 82 67.1
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 2.9e-18 95.1 82 65.9
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 5.0e-18 94.4 81 63.0
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 6.5e-18 94.0 86 65.1
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 8.5e-18 93.6 80 63.8
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 1.1e-17 93.2 81 61.7
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 1.4e-17 92.8 81 56.8
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 2.5e-17 92.0 82 67.1
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 2.5e-17 92.0 80 62.5
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 3.2e-17 91.7 82 64.6
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 5.5e-17 90.9 81 55.6
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 7.2e-17 90.5 81 61.7
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 9.3e-17 90.1 85 64.7
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 1.2e-16 89.7 84 65.5
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.6e-16 89.4 83 56.6
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 4.6e-16 87.8 88 63.6
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 6.1e-16 87.4 88 62.5
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 7.9e-16 87.0 86 58.1
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 1.4e-15 86.3 81 60.5
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 1.8e-15 85.9 86 60.5
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 1.8e-15 85.9 82 58.5
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 2.3e-15 85.5 87 62.1
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 3.0e-15 85.1 83 59.0
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 3.0e-15 85.1 86 59.3
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 3.9e-15 84.7 88 61.4
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 1.1e-14 83.2 85 60.0
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 1.5e-14 82.8 91 57.1
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 1.5e-14 82.8 85 58.8
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 1.9e-14 82.4 82 52.4
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 2.5e-14 82.0 96 55.2
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 2.5e-14 82.0 96 55.2
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 4.3e-14 81.3 88 56.8
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 5.7e-14 80.9 85 57.6
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 1.3e-13 79.7 82 59.8
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 1.3e-13 79.7 85 57.6
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 1.7e-13 79.3 81 60.5
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 2.2e-13 79.0 86 54.7
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 2.2e-13 79.0 81 58.0
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 2.2e-13 79.0 84 57.1
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 2.8e-13 78.6 82 59.8
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 4.8e-13 77.8 97 53.6
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 4.8e-13 77.8 97 53.6
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 6.3e-13 77.4 80 57.5
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 8.2e-13 77.0 96 55.2
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 1.1e-12 76.6 97 54.6
Sc07g0006690 Simmondsia chinensis HOM05D001872 ORTHO05D001859 1.4e-12 76.3 88 52.3
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 1.8e-12 75.9 125 41.6
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 1.8e-12 75.9 83 54.2
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 2.4e-12 75.5 86 53.5
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 2.4e-12 75.5 82 56.1
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 3.1e-12 75.1 85 54.1
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 4.1e-12 74.7 97 52.6
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 4.1e-12 74.7 95 55.8
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 5.3e-12 74.3 97 54.6
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 6.9e-12 73.9 97 52.6
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 1.5e-11 72.8 96 53.1
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 2.0e-11 72.4 48 77.1
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 2.6e-11 72.0 96 53.1
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 3.4e-11 71.6 96 54.2
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 5.9e-11 70.9 94 54.3
arahy.Tifrunner.gnm1.ann1.XTCX6A Arachis hypogaea HOM05D004241 ORTHO05D006031 1.0e-10 70.1 58 63.8
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 1.3e-10 69.7 49 73.5
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 1.3e-10 69.7 49 73.5
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.7e-10 69.3 82 52.4
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 2.2e-10 68.9 96 51.0
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 2.2e-10 68.9 84 53.6
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 5.0e-10 67.8 85 52.9
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 5.0e-10 67.8 82 50.0
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 6.5e-10 67.4 62 58.1
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 8.5e-10 67.0 95 51.6
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 8.5e-10 67.0 95 51.6
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.1e-09 66.6 95 51.6
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 1.1e-09 66.6 95 51.6
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 9.4e-09 63.5 95 49.5
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 1.6e-08 62.8 117 35.9
Rhsim04G0126400 Rhododendron simsii HOM05D004241 ORTHO05D006031 1.6e-08 62.8 41 75.6
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 1.6e-08 62.8 84 48.8
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 2.7e-08 62.0 83 48.2
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 3.6e-08 61.6 48 72.9
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 7.9e-08 60.5 81 45.7
arahy.Tifrunner.gnm1.ann1.44A4XL Arachis hypogaea HOM05D004241 ORTHO05D026924 1.8e-07 59.3 44 68.2
Medtr7g069420 Medicago truncatula HOM05D004241 ORTHO05D026924 3.0e-07 58.5 35 82.9
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 6.7e-07 57.4 80 52.5
Zm00001eb286140 Zea mays HOM05D004241 ORTHO05D006031 3.3e-06 55.1 85 51.8
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 4.4e-06 54.7 54 64.8


User provided reference genes

Program Settings