Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1448.0 739 100.0
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 0.0e+00 1344.7 739 93.8
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1332.4 739 93.2
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1305.0 726 92.7
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.5e-293 1010.7 545 96.3
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.7e-223 779.2 770 58.8
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 6.3e-220 768.1 767 58.9
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 3.2e-147 526.6 742 46.2
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.0e-146 522.3 479 65.8
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 4.0e-142 509.6 793 46.3
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 9.9e-141 505.0 759 46.1
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 9.3e-139 498.4 757 44.6
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 3.8e-132 476.5 763 43.6
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 3.5e-130 469.9 561 50.6
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 7.9e-130 468.8 308 85.1
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.3e-129 468.0 712 44.9
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.7e-129 467.6 757 44.1
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.3e-129 467.2 720 44.3
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 2.3e-129 467.2 736 44.2
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.7e-129 465.3 762 42.7
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.1e-128 464.9 762 42.5
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 4.8e-127 459.5 758 42.9
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.1e-126 458.4 823 41.6
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 7.1e-123 445.7 750 42.8
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 3.5e-122 443.4 727 43.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 5.6e-120 436.0 753 40.9
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 9.6e-120 435.3 752 42.3
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.3e-119 434.9 687 42.9
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 4.0e-118 429.9 725 43.0
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.2e-115 420.2 756 41.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 7.1e-115 419.1 733 41.3
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.3e-113 414.8 657 43.7
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 3.0e-113 413.7 764 40.8
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 6.5e-108 396.0 676 41.0
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.1e-107 395.2 738 39.8
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 7.9e-106 389.0 706 39.2
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.3e-105 388.3 743 37.3
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.9e-105 386.7 637 41.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 6.7e-105 386.0 699 40.3
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 1.1e-104 385.2 765 39.1
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.1e-104 385.2 732 39.9
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 6.3e-103 379.4 708 38.6
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 4.1e-102 376.7 722 40.9
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 4.1e-102 376.7 702 40.0
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 6.9e-102 375.9 700 40.3
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.0e-100 372.1 717 39.6
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.7e-100 371.3 743 38.5
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.2e-100 370.9 710 39.0
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 2.9e-100 370.5 768 39.8
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 3.8e-100 370.2 620 42.4
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.8e-100 370.2 711 39.5
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.1e-99 368.6 701 39.7
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.9e-99 367.9 509 48.1
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 2.5e-99 367.5 696 38.1
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 2.1e-98 364.4 738 37.7
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 6.1e-98 362.8 729 38.5
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.4e-97 361.7 703 37.7
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 2.3e-97 360.9 815 37.9
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 6.7e-97 359.4 716 37.8
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 2.5e-96 357.5 573 42.8
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 7.4e-96 355.9 562 45.2
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 9.1e-94 349.0 722 38.8
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.5e-93 348.2 706 37.3
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 7.7e-93 345.9 479 43.0
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 2.2e-92 344.4 594 40.4
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.4e-91 341.7 742 36.9
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.9e-91 341.3 744 39.0
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 3.2e-91 340.5 711 37.6
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 7.2e-91 339.3 649 39.3
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.6e-90 338.2 765 36.1
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 3.6e-90 337.0 612 40.5
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.0e-89 335.5 564 40.4
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.4e-89 335.1 702 37.7
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.8e-89 334.7 724 35.6
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.8e-89 334.7 724 35.6
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.9e-89 333.6 761 35.7
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 5.7e-88 329.7 706 36.0
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.3e-87 328.6 704 37.1
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.7e-87 328.2 708 36.6
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.8e-86 324.7 687 39.6
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.6e-85 321.6 708 35.9
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 5.5e-83 313.2 379 48.8
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.3e-81 307.8 458 44.8
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 3.0e-81 307.4 889 33.9
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 8.8e-81 305.8 707 35.6
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.5e-80 305.1 448 43.3
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 8.2e-79 299.3 538 41.6
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.4e-78 298.5 517 42.2
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.2e-75 286.2 455 44.0
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.8e-71 274.2 305 59.3
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 1.4e-65 255.4 233 59.2
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.3e-60 238.0 368 40.8
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.1e-54 217.2 534 38.4
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 6.6e-52 209.9 369 45.8
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 8.6e-52 209.5 448 37.1
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.9e-51 208.4 614 30.6
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 2.5e-51 208.0 292 43.8
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 2.6e-48 198.0 681 29.2
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 3.4e-48 197.6 446 37.9
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 7.5e-48 196.4 583 30.2
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.9e-46 191.8 356 35.7
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 9.2e-46 189.5 369 39.0
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.6e-44 183.0 329 44.7
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 4.7e-42 177.2 438 35.6
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.4e-40 171.0 180 58.3
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.7e-39 168.7 785 27.0
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.7e-37 161.4 207 44.4
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.5e-35 152.9 350 40.0
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.1e-29 135.2 239 38.1
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.9e-27 128.6 113 65.5
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.8e-26 124.8 353 37.7
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.1e-25 122.9 282 31.9
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.7e-23 115.5 80 73.8
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.1e-22 112.8 272 39.3
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.3e-18 99.4 296 30.7
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 3.6e-18 97.8 281 35.9
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.2e-16 92.8 50 94.0
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 7.9e-13 80.1 119 42.0
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 4.8e-10 70.9 248 29.8
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.8e-09 68.9 48 77.1
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.0e-09 67.8 263 31.9
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 4.5e-08 64.3 40 80.0


User provided reference genes

Program Settings