Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.4e-284 981.1 532 100.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.2e-267 925.2 527 94.1
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-258 896.3 503 95.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 4.6e-249 864.4 505 93.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-248 862.8 505 93.7
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 5.3e-221 771.2 548 80.5
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.2e-166 589.7 547 67.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.6e-156 557.0 546 64.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.1e-144 516.2 541 64.0
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.2e-133 479.6 559 57.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 4.3e-130 469.2 536 59.7
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 3.1e-128 463.0 556 53.2
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.0e-127 460.3 542 55.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.8e-127 458.8 550 56.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.0e-126 455.7 543 58.2
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.5e-126 455.3 554 52.9
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.9e-125 453.8 571 55.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.2e-124 451.1 555 52.3
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.1e-124 450.3 553 51.9
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.5e-124 449.5 556 55.0
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 4.6e-124 449.1 555 55.0
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.0e-123 448.0 568 54.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.8e-123 447.2 565 51.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.3e-122 443.0 552 51.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.3e-121 441.0 553 51.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 6.9e-120 435.3 552 51.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.9e-120 435.3 543 52.5
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-119 434.1 554 51.6
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.4e-119 433.0 543 51.0
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.9e-119 432.2 545 51.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.0e-118 431.4 564 48.4
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.1e-117 427.9 559 54.9
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 7.2e-117 425.2 549 49.9
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.0e-115 421.4 551 50.1
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.4e-115 421.0 557 48.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.1e-115 419.1 481 55.7
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 9.7e-114 414.8 535 51.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.7e-113 412.9 537 49.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.9e-112 408.7 576 46.2
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 2.9e-110 403.3 534 49.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 7.2e-109 398.7 526 49.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.2e-108 397.9 550 50.5
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.6e-108 397.5 538 47.8
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 8.8e-107 391.7 538 52.8
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.7e-105 387.5 555 48.3
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.3e-105 385.6 538 48.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 6.3e-105 385.6 548 48.9
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.8e-104 384.0 549 45.9
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.1e-104 382.9 539 46.4
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.1e-104 381.7 546 46.2
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.2e-102 377.1 532 46.2
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-101 374.8 527 47.2
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.9e-101 374.0 548 45.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.5e-101 373.6 550 44.9
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.2e-101 372.9 528 47.5
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.6e-100 369.8 471 49.7
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.6e-100 369.8 550 45.1
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-99 367.9 369 56.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 5.2e-99 365.9 550 46.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.7e-99 365.5 542 47.2
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.5e-98 364.4 488 50.8
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-98 364.0 535 45.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 5.7e-98 362.5 478 48.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.7e-97 360.9 530 43.8
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.7e-97 359.8 530 44.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 6.3e-97 359.0 550 44.0
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.8e-96 357.5 498 49.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.1e-96 356.3 535 47.1
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.3e-96 355.9 527 46.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 4.5e-95 352.8 531 45.8
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 5.9e-95 352.4 380 55.3
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 7.7e-95 352.1 473 47.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-94 351.7 468 46.4
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-94 351.7 468 46.4
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.0e-94 351.7 468 46.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-94 350.9 545 43.7
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.5e-94 349.0 516 43.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.5e-93 347.1 361 56.8
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.1e-92 344.0 523 43.4
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.7e-92 343.6 442 48.6
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 6.1e-92 342.4 479 46.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.4e-91 341.3 397 51.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-91 340.9 533 44.3
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.0e-91 340.1 550 43.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.2e-90 338.2 479 46.1
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 5.7e-90 335.9 489 46.2
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 7.5e-90 335.5 440 48.2
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-89 334.7 434 46.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.8e-89 333.6 480 45.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 6.3e-89 332.4 476 46.8
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 6.3e-89 332.4 476 46.8
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 6.3e-89 332.4 476 46.8
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-88 331.3 544 43.0
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.4e-88 330.5 538 42.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.1e-88 330.1 469 45.6
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 9.1e-88 328.6 522 44.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 7.7e-87 325.5 466 45.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-85 321.2 532 43.8
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.5e-85 321.2 532 43.8
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 7.2e-85 318.9 372 50.3
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 6.1e-84 315.8 449 44.3
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 8.0e-84 315.5 482 44.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.6e-82 310.5 487 43.1
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 5.7e-82 309.3 476 43.3
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 7.5e-82 308.9 471 44.4
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 7.5e-82 308.9 542 39.1
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 4.9e-81 306.2 506 48.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.9e-81 306.2 371 48.2
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.3e-81 305.8 363 51.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 8.3e-81 305.4 473 45.5
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.3e-81 305.4 374 47.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 8.6e-78 295.4 367 49.3
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.1e-77 295.0 378 47.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.3e-77 293.5 523 40.7
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 9.5e-77 292.0 381 47.2
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.0e-75 287.0 368 49.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.6e-74 283.9 419 43.4
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.7e-73 281.2 488 38.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 9.2e-72 275.4 350 48.9
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.9e-71 272.7 412 44.7
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.7e-70 271.2 371 44.7
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.3e-70 270.8 446 40.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.0e-70 269.6 526 37.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 8.6e-70 268.9 338 49.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-67 261.2 465 41.3
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-66 258.5 557 40.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.0e-66 257.7 391 44.2
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.4e-66 256.5 315 47.6
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 9.8e-66 255.4 318 48.4
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.4e-65 252.7 446 41.0
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 8.3e-65 252.3 331 48.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.6e-61 239.6 395 39.5
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.9e-57 227.3 341 44.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.4e-56 224.2 370 43.5
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.1e-56 223.4 394 38.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.6e-55 221.5 233 57.1
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.0e-54 217.2 393 36.4
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-53 215.3 549 32.8
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-53 215.3 549 32.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-53 215.3 297 42.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.6e-42 177.6 509 30.5
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.6e-38 162.9 179 53.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.6e-38 162.9 179 52.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.6e-36 157.1 305 36.1
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.5e-34 150.2 309 35.9
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.6e-34 149.4 528 29.0
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.7e-31 141.0 180 52.2
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.6e-31 140.2 422 28.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-30 138.7 226 37.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-30 138.3 422 28.0
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 8.1e-28 129.4 311 31.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.5e-26 125.2 473 26.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.5e-26 123.6 346 30.3
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.9e-25 120.9 340 28.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 5.5e-24 116.7 156 48.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 7.1e-24 116.3 134 52.2
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.3e-21 107.5 217 32.7
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 7.6e-18 96.3 201 35.8
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.1e-14 83.6 166 34.9
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 7.4e-13 79.7 89 47.2
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 4.1e-11 73.9 117 42.7
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.0e-06 57.8 56 44.6


User provided reference genes

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