Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.5e-275 949.9 474 100.0
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.2e-274 948.3 474 99.8
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.6e-261 905.6 491 93.5
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 6.6e-255 883.6 461 96.3
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.8e-253 878.2 491 90.4
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.2e-237 823.9 474 88.8
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.7e-234 814.7 457 89.5
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 2.2e-210 735.7 451 80.7
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 3.3e-182 642.1 458 70.3
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 1.4e-180 636.7 451 71.8
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 4.5e-179 631.7 448 69.9
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 6.5e-178 627.9 451 68.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 6.1e-176 621.3 451 68.1
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.9e-175 618.6 451 67.8
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 6.7e-175 617.8 450 69.3
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 2.6e-174 615.9 449 67.5
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 4.4e-174 615.1 451 68.1
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.3e-173 613.6 450 68.4
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 3.1e-172 609.0 452 66.4
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 6.9e-172 607.8 444 68.2
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.5e-171 606.7 444 68.2
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 5.0e-170 601.7 451 65.0
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 1.1e-169 600.5 451 67.8
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.4e-169 600.1 471 64.5
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 1.9e-169 599.7 447 64.7
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.5e-169 598.2 454 66.7
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.4e-167 593.6 447 63.8
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 3.9e-167 592.0 457 65.6
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.5e-166 590.1 525 59.2
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 2.0e-166 589.7 423 69.3
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.4e-166 588.6 552 57.1
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.8e-165 585.9 444 65.5
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 2.8e-165 585.9 444 65.5
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.1e-164 583.9 443 66.4
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 1.8e-164 583.2 443 65.2
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.0e-163 579.7 443 65.9
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 7.7e-163 577.8 445 65.2
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.3e-162 577.0 443 64.1
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.7e-162 576.6 497 60.2
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.9e-162 575.9 446 65.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.1e-161 573.9 449 63.3
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 1.9e-161 573.2 444 65.8
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 7.2e-161 571.2 444 65.5
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.7e-160 569.3 444 65.3
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 8.0e-160 567.8 452 63.5
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 8.0e-160 567.8 444 63.3
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.0e-159 567.4 444 63.7
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.0e-159 567.4 444 63.7
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 1.4e-159 567.0 446 63.5
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 5.2e-159 565.1 443 63.7
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 6.7e-159 564.7 443 63.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 6.7e-159 564.7 445 61.8
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 8.8e-159 564.3 442 66.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 8.8e-159 564.3 394 70.6
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.2e-158 563.9 446 62.1
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.5e-158 563.5 444 63.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 2.0e-158 563.1 383 72.6
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 2.0e-158 563.1 448 62.3
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.6e-158 562.8 456 62.3
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 5.7e-158 561.6 480 57.3
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.2e-157 559.7 454 62.6
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.8e-157 559.3 444 63.5
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.4e-156 557.0 439 61.3
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 7.0e-156 554.7 446 63.9
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 5.9e-155 551.6 451 63.6
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.3e-154 550.4 480 58.8
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.9e-154 549.3 451 62.5
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.8e-154 548.9 394 70.6
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 5.0e-154 548.5 396 66.9
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.4e-151 540.4 393 67.9
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 7.5e-150 534.6 470 59.4
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.4e-148 529.6 330 80.6
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 5.4e-148 528.5 396 65.9
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.9e-146 522.7 585 50.1
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 3.8e-146 522.3 456 59.9
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.1e-144 516.5 450 58.7
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 5.2e-143 511.9 448 56.5
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.7e-141 506.9 448 58.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.4e-140 503.8 385 67.0
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 2.9e-138 496.1 421 61.3
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 3.4e-134 482.6 495 52.9
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.4e-132 477.2 330 70.9
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.0e-130 471.1 442 52.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 9.8e-126 454.5 417 58.0
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 2.9e-117 426.4 332 66.9
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.1e-116 424.5 438 52.1
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 2.4e-116 423.3 392 55.9
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.5e-113 414.1 295 67.5
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 3.3e-113 412.9 439 49.2
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 5.8e-110 402.1 436 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 2.9e-109 399.8 449 47.4
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.1e-108 396.0 297 64.6
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.1e-100 371.3 297 66.0
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 7.1e-100 368.6 260 70.0
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 8.7e-98 361.7 449 43.2
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 4.8e-96 355.9 324 56.2
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 3.2e-84 316.6 368 46.7
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 1.4e-79 301.2 297 53.2
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 4.1e-63 246.5 194 62.9
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.2e-59 235.0 186 65.1
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.8e-56 223.8 293 45.4
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 2.1e-51 207.6 171 65.5
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 2.0e-49 201.1 164 62.8
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.3e-48 198.4 341 37.0
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.2e-46 191.8 201 48.8
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.9e-45 187.2 146 67.1
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.7e-43 180.6 314 36.6
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.6e-43 180.3 129 68.2
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 8.2e-40 169.1 172 54.7
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.1e-39 167.2 156 57.7
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.1e-39 167.2 126 67.5
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 2.6e-33 147.5 92 69.6
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 4.8e-32 143.3 93 69.9
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 7.7e-30 136.0 98 68.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.2e-28 129.4 96 58.3
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.4e-26 125.2 382 28.0
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 2.9e-16 90.9 165 31.5
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 2.8e-11 74.3 55 61.8
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 3.1e-10 70.9 69 55.1
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 4.0e-10 70.5 49 61.2
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 5.2e-10 70.1 63 47.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.7e-08 65.1 68 50.0
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 1.4e-07 62.0 69 50.7
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 1.4e-07 62.0 69 50.7
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 7.8e-06 56.2 58 51.7


User provided reference genes

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