Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.7e-104 380.6 176 100.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.1e-61 238.4 210 61.9
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.7e-49 198.4 238 49.6
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 1.3e-35 153.7 83 86.7
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-35 153.7 83 86.7
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 2.1e-25 119.8 77 72.7
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 4.0e-16 89.0 114 43.0
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 4.0e-16 89.0 71 57.7
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 6.9e-16 88.2 80 57.5
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 5.8e-15 85.1 93 51.6
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 7.6e-15 84.7 72 55.6
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 9.9e-15 84.3 78 48.7
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 1.7e-14 83.6 82 50.0
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.9e-14 82.8 84 53.6
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.9e-14 82.8 77 49.4
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.8e-14 82.4 77 54.5
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 3.8e-14 82.4 81 54.3
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 3.8e-14 82.4 78 47.4
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.8e-14 82.4 70 51.4
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 6.4e-14 81.6 79 49.4
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.1e-13 80.9 74 52.7
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.4e-13 80.5 82 51.2
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.9e-13 80.1 70 51.4
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 2.4e-13 79.7 72 51.4
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.2e-13 79.3 83 43.4
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.2e-13 79.3 92 48.9
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 3.2e-13 79.3 77 51.9
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 4.2e-13 79.0 84 48.8
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 4.2e-13 79.0 76 50.0
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 4.2e-13 79.0 81 44.4
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 5.4e-13 78.6 77 51.9
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 5.4e-13 78.6 81 44.4
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 5.4e-13 78.6 73 54.8
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 5.4e-13 78.6 73 54.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 7.1e-13 78.2 71 52.1
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.1e-13 78.2 69 52.2
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 9.3e-13 77.8 74 52.7
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.2e-12 77.4 75 50.7
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.2e-12 77.4 77 44.2
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.2e-12 77.4 86 44.2
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.2e-12 77.4 71 49.3
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-12 77.0 86 44.2
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.6e-12 77.0 75 50.7
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.6e-12 77.0 71 50.7
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 2.1e-12 76.6 77 45.5
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 2.1e-12 76.6 77 45.5
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.1e-12 76.6 77 48.1
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.1e-12 76.6 80 50.0
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 2.1e-12 76.6 78 46.2
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 2.7e-12 76.3 77 44.2
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 2.7e-12 76.3 77 44.2
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 2.7e-12 76.3 74 47.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 2.7e-12 76.3 89 43.8
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.7e-12 76.3 73 53.4
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 2.7e-12 76.3 88 45.5
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 3.5e-12 75.9 84 44.0
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 3.5e-12 75.9 74 54.1
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 3.5e-12 75.9 75 50.7
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.5e-12 75.9 82 46.3
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 3.5e-12 75.9 83 45.8
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 4.6e-12 75.5 82 41.5
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 4.6e-12 75.5 85 43.5
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 4.6e-12 75.5 82 45.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 4.6e-12 75.5 75 46.7
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 6.0e-12 75.1 73 46.6
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 6.0e-12 75.1 69 50.7
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.0e-12 75.1 79 45.6
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.9e-12 74.7 69 50.7
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 1.0e-11 74.3 78 47.4
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.0e-11 74.3 78 46.2
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.0e-11 74.3 81 44.4
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.0e-11 74.3 81 44.4
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 1.3e-11 73.9 79 46.8
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.3e-11 73.9 79 45.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.3e-11 73.9 79 45.6
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 1.3e-11 73.9 93 44.1
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.3e-11 73.9 78 42.3
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.8e-11 73.6 73 49.3
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 1.8e-11 73.6 69 49.3
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.8e-11 73.6 79 45.6
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.8e-11 73.6 76 50.0
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.8e-11 73.6 71 47.9
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.8e-11 73.6 71 47.9
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.8e-11 73.6 89 42.7
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 2.3e-11 73.2 87 39.1
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 2.3e-11 73.2 87 39.1
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.3e-11 73.2 73 49.3
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.0e-11 72.8 73 49.3
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 3.9e-11 72.4 78 42.3
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 3.9e-11 72.4 72 45.8
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.9e-11 72.4 72 45.8
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 3.9e-11 72.4 76 46.1
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.1e-11 72.0 72 51.4
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 6.7e-11 71.6 78 42.3
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 6.7e-11 71.6 70 50.0
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 6.7e-11 71.6 75 48.0
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.1e-10 70.9 74 48.6
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.1e-10 70.9 86 40.7
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.1e-10 70.9 72 50.0
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.5e-10 70.5 69 47.8
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 1.9e-10 70.1 69 47.8
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.5e-10 69.7 90 37.8
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 2.5e-10 69.7 86 38.4
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 2.5e-10 69.7 74 44.6
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.5e-10 69.7 81 44.4
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 2.5e-10 69.7 81 44.4
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.5e-10 69.7 81 44.4
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 3.3e-10 69.3 78 46.2
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.3e-10 69.3 92 35.9
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 3.3e-10 69.3 87 47.1
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 3.3e-10 69.3 87 47.1
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 3.3e-10 69.3 71 46.5
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 4.3e-10 68.9 88 42.0
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.3e-10 68.9 84 41.7
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 5.6e-10 68.6 83 42.2
FAN14G3646 Fragaria x ananassa HOM05D003268 ORTHO05D209592 7.4e-10 68.2 36 86.1
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 9.6e-10 67.8 74 41.9
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.3e-09 67.4 70 42.9
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.3e-09 67.4 107 36.4
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.6e-09 67.0 74 44.6
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.6e-09 67.0 62 51.6
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.6e-09 67.0 62 51.6
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.1e-09 66.6 73 43.8
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 2.1e-09 66.6 73 43.8
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.8e-09 66.2 71 40.8
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.8e-09 66.2 72 44.4
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 3.7e-09 65.9 74 40.5
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 3.7e-09 65.9 93 36.6
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 4.8e-09 65.5 64 54.7
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 4.8e-09 65.5 70 48.6
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 4.8e-09 65.5 71 45.1
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 6.2e-09 65.1 84 36.9
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 8.1e-09 64.7 88 39.8
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 1.1e-08 64.3 78 46.2
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.8e-08 63.5 82 41.5
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.8e-08 63.5 82 41.5
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.8e-08 63.5 81 35.8
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 3.1e-08 62.8 89 40.4
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.0e-08 62.4 74 41.9
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.0e-08 62.4 77 41.6
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.0e-08 62.4 78 39.7
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 5.3e-08 62.0 83 39.8
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 9.0e-08 61.2 80 37.5
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.2e-07 60.8 71 46.5
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-07 60.5 86 36.0
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 2.6e-07 59.7 70 41.4
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.6e-07 59.7 79 38.0
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.4e-07 59.3 70 41.4
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 4.5e-07 58.9 80 36.2
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.5e-07 58.9 75 38.7
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.5e-07 58.9 67 49.3
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 5.8e-07 58.5 75 38.7
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 7.6e-07 58.2 80 35.0
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 9.9e-07 57.8 65 46.2
Lsat_1_v5_gn_9_82161 Lactuca sativa HOM05D050257 ORTHO05D003719 1.3e-06 57.4 109 32.1
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 1.3e-06 57.4 75 38.7
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.2e-06 56.6 72 40.3
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 2.2e-06 56.6 75 38.7
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.9e-06 56.2 73 38.4
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 8.4e-06 54.7 83 39.8


User provided reference genes

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