Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.6e-83 312.8 160 100.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.9e-82 308.5 160 99.4
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-80 303.1 160 98.1
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.4e-78 294.7 153 98.7
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.7e-78 294.3 152 99.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 5.4e-76 287.7 153 94.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 4.6e-67 258.1 153 85.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 3.0e-66 255.4 153 84.3
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.9e-65 252.7 153 82.4
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.9e-65 252.7 153 82.4
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.3e-65 251.9 153 82.4
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 3.3e-65 251.9 153 82.4
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.3e-65 251.9 155 81.3
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.3e-65 250.8 155 81.9
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 9.5e-65 250.4 155 82.6
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.6e-64 249.6 153 81.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-64 249.6 155 81.3
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.1e-64 249.2 153 82.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.6e-64 248.4 150 82.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.6e-64 248.4 153 82.4
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.6e-64 248.4 153 81.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 8.0e-64 247.3 156 76.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.0e-64 247.3 153 79.7
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 8.0e-64 247.3 153 77.8
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.1e-63 246.9 153 79.1
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.8e-63 246.1 152 79.6
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.8e-63 246.1 151 82.1
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.3e-63 245.7 154 80.5
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.1e-63 245.4 153 77.8
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.1e-63 245.4 153 81.0
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.1e-63 245.4 154 79.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.2e-63 244.6 151 80.8
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 5.2e-63 244.6 153 79.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 5.2e-63 244.6 153 80.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 8.9e-63 243.8 155 79.4
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.9e-63 243.8 154 79.9
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 8.9e-63 243.8 152 80.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-62 243.0 154 78.6
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 79.1
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 79.1
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 2.0e-62 242.7 153 79.1
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.6e-62 242.3 153 79.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 3.4e-62 241.9 153 79.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 3.4e-62 241.9 154 79.2
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.4e-62 241.5 153 79.1
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 4.4e-62 241.5 153 77.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.8e-62 241.1 152 79.6
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 7.5e-62 240.7 152 80.3
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 7.5e-62 240.7 153 79.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 7.5e-62 240.7 143 81.8
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.5e-62 240.7 152 77.0
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 7.5e-62 240.7 153 77.1
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 7.5e-62 240.7 152 79.6
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 9.8e-62 240.4 152 77.0
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.8e-62 240.4 153 79.1
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 9.8e-62 240.4 153 77.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 9.8e-62 240.4 157 77.1
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-61 240.0 153 77.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.3e-61 240.0 153 79.7
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.7e-61 239.6 149 78.5
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.7e-61 239.6 153 77.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.2e-61 239.2 152 79.6
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 2.2e-61 239.2 152 78.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 2.2e-61 239.2 153 78.4
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.2e-61 239.2 145 79.3
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.7e-61 238.4 152 79.6
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 4.9e-61 238.0 153 76.5
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.9e-61 238.0 155 77.4
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 6.4e-61 237.7 145 80.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.3e-61 237.3 153 75.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.1e-60 236.9 153 77.1
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.1e-60 236.9 154 76.6
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 76.5
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.4e-60 235.7 153 75.2
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.2e-60 235.3 153 75.8
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.1e-60 235.0 155 75.5
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.4e-60 234.6 153 76.5
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 5.4e-60 234.6 153 75.8
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.0e-60 234.2 153 75.8
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 9.2e-60 233.8 153 76.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.2e-59 233.4 153 76.5
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.2e-59 233.4 151 76.8
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.1e-59 232.6 153 76.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.7e-59 232.3 153 73.9
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.5e-59 231.9 153 77.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 4.6e-59 231.5 153 77.1
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 6.0e-59 231.1 153 74.5
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.0e-58 230.3 154 76.6
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.3e-58 229.9 152 75.7
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.3e-58 229.2 153 71.9
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.0e-58 228.8 154 75.3
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 6.6e-58 227.6 155 77.4
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 6.6e-58 227.6 153 71.2
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.1e-57 226.9 151 74.8
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 5.6e-57 224.6 153 70.6
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 9.5e-57 223.8 152 73.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 9.5e-57 223.8 153 71.2
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.6e-56 223.0 152 74.3
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.6e-56 223.0 151 73.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 4.7e-56 221.5 155 69.7
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 8.1e-56 220.7 149 70.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.3e-55 219.2 153 71.9
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.0e-55 218.4 154 68.8
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.2e-54 216.9 153 68.6
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.5e-54 216.5 153 68.6
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 3.4e-54 215.3 152 68.4
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 4.4e-54 214.9 152 68.4
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 7.5e-54 214.2 150 74.7
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.7e-53 213.0 152 66.4
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.7e-53 213.0 152 67.1
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.7e-53 213.0 152 65.1
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 6.4e-53 211.1 152 67.8
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.3e-53 210.7 152 73.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.4e-52 209.9 152 65.8
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.4e-52 209.9 152 65.1
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.9e-52 209.5 152 65.1
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 3.2e-52 208.8 152 66.4
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 4.1e-52 208.4 153 64.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 9.2e-52 207.2 152 65.8
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-51 206.8 152 64.5
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.2e-51 206.8 152 64.5
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 5.6e-49 198.0 170 59.4
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.1e-47 193.7 149 60.4
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 8.9e-47 190.7 145 59.3
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.6e-46 189.1 145 66.9
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.4e-46 188.7 120 76.7
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.3e-45 186.8 123 73.2
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.2e-45 186.0 152 60.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 6.4e-45 184.5 122 75.4
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.2e-44 180.6 152 61.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.3e-41 172.2 149 55.7
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.7e-40 168.3 111 73.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.2e-38 163.7 127 61.4
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.4e-38 161.8 111 69.4
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.7e-37 159.8 181 53.6
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.3e-34 150.2 153 49.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.3e-33 144.4 95 77.9
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.2e-32 141.4 124 61.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 3.8e-29 132.1 152 44.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 7.9e-27 124.4 75 76.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.8e-26 123.2 78 75.6
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.1e-26 121.7 100 64.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 5.6e-25 118.2 74 81.1
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.7e-24 115.5 68 77.9
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.1e-23 114.0 83 74.7
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.1e-23 114.0 75 68.0
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.1e-23 112.5 67 76.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 6.9e-23 111.3 74 77.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 2.6e-22 109.4 78 75.6
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 7.6e-22 107.8 89 66.3
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.3e-18 96.3 149 38.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.0e-10 70.9 55 76.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 7.7e-06 54.7 67 53.7


User provided reference genes

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