Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.5e-175 619.4 312 100.0
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.1e-165 586.6 321 94.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.6e-164 581.3 312 94.9
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 1.0e-163 580.1 312 94.6
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 2.1e-161 572.4 312 91.3
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 6.6e-147 524.2 269 99.3
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 4.5e-127 458.4 312 71.5
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 7.6e-127 457.6 312 72.1
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.8e-110 402.1 309 62.8
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 4.2e-109 398.7 308 62.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 7.2e-109 397.9 311 63.3
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 7.2e-109 397.9 312 64.4
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 1.6e-108 396.7 308 63.6
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.6e-108 396.7 306 63.4
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.1e-108 396.4 307 63.8
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.7e-108 396.0 307 62.9
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 2.7e-108 396.0 307 62.5
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 3.6e-108 395.6 332 59.0
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.4e-107 393.7 309 62.5
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.8e-107 393.3 308 64.0
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 3.0e-107 392.5 302 64.2
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.0e-107 392.5 309 62.1
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 3.9e-107 392.1 310 63.5
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 5.2e-107 391.7 302 64.2
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 2.0e-106 389.8 307 63.2
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.6e-106 389.4 309 62.1
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 5.7e-106 388.3 309 60.8
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.3e-105 384.8 309 61.5
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 6.3e-105 384.8 308 62.3
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 8.2e-105 384.4 306 60.8
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.8e-104 383.3 312 62.2
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 2.4e-104 382.9 308 61.4
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.1e-104 382.5 311 62.1
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.0e-104 381.3 311 60.8
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 2.0e-103 379.8 310 61.9
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 2.6e-103 379.4 312 62.2
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 8.5e-102 374.4 308 59.7
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.9e-101 373.2 308 59.1
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.5e-101 372.9 311 61.4
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 9.4e-101 370.9 309 60.5
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 2.1e-100 369.8 309 58.6
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 3.6e-100 369.0 305 59.0
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 6.1e-100 368.2 307 59.0
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.0e-99 367.5 308 61.0
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.4e-99 367.1 306 58.8
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 1.8e-99 366.7 306 58.5
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 6.7e-99 364.8 304 57.9
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 2.0e-98 363.2 306 58.2
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 3.3e-98 362.5 308 59.4
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 3.3e-98 362.5 308 57.8
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.7e-97 360.1 306 57.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.7e-97 360.1 307 59.3
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 2.2e-97 359.8 311 59.5
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 2.2e-97 359.8 311 59.5
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 2.8e-97 359.4 305 59.3
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.8e-97 359.4 309 56.0
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 4.8e-97 358.6 311 59.2
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 8.2e-97 357.8 310 59.4
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 8.2e-97 357.8 308 59.4
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 8.2e-97 357.8 307 59.3
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 1.4e-96 357.1 311 59.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 2.0e-95 353.2 308 58.1
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 5.9e-95 351.7 306 55.2
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 5.9e-95 351.7 328 55.8
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 8.5e-94 347.8 295 56.3
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 1.9e-93 346.7 303 56.1
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 5.5e-93 345.1 313 56.9
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 5.5e-93 345.1 309 56.0
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 1.0e-91 340.9 309 54.4
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 1.8e-91 340.1 310 55.2
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 5.2e-91 338.6 224 74.1
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 6.8e-91 338.2 305 55.4
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 5.7e-90 335.1 281 61.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 9.8e-90 334.3 298 57.7
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 4.8e-89 332.0 291 56.7
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.4e-88 329.7 273 61.9
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.7e-87 326.2 310 54.5
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 7.7e-87 324.7 308 52.6
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 2.2e-86 323.2 268 61.6
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 7.2e-85 318.2 272 63.2
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.8e-84 316.2 304 53.6
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 2.0e-82 310.1 305 53.4
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 5.4e-80 302.0 319 50.8
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 5.4e-80 302.0 306 53.6
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 9.5e-77 291.2 256 57.4
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.2e-76 290.8 231 60.6
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.6e-76 290.4 306 49.7
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 2.1e-76 290.0 271 56.1
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.6e-74 283.1 241 58.5
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 8.3e-73 278.1 308 48.7
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 5.4e-72 275.4 269 53.9
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 7.0e-72 275.0 246 59.8
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 6.6e-70 268.5 221 57.9
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 5.2e-67 258.8 241 57.3
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 4.4e-66 255.8 255 51.4
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 1.3e-62 244.2 316 42.7
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 8.6e-62 241.5 220 57.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 3.6e-60 236.1 306 45.1
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 4.0e-59 232.6 207 55.1
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 3.7e-57 226.1 306 40.8
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.0e-55 218.8 323 38.4
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 5.6e-53 212.2 192 59.4
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.1e-51 206.5 302 39.7
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 8.9e-51 204.9 303 41.3
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 9.9e-50 201.4 151 59.6
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 3.5e-47 193.0 184 54.3
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.6e-44 184.1 225 46.2
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.9e-41 172.6 187 48.1
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 1.2e-39 167.9 113 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.0e-38 164.9 168 51.2
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 8.7e-38 161.8 316 32.3
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.9e-37 160.6 256 41.0
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 5.3e-35 152.5 157 52.2
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.5e-34 151.0 162 50.0
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.6e-31 141.0 107 60.7
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 3.9e-30 136.3 154 50.0
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 2.4e-24 117.1 89 56.2
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 7.9e-23 112.1 141 44.0
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.5e-21 107.1 72 61.1
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.3e-20 104.8 166 39.2
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.8e-20 102.8 179 37.4
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 6.2e-20 102.4 74 62.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.8e-19 100.9 74 60.8
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 4.5e-18 96.3 145 39.3
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 4.9e-17 92.8 115 42.6
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 5.1e-14 82.8 70 51.4
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 8.7e-14 82.0 193 34.2
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 5.7e-13 79.3 150 36.7
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 4.1e-11 73.2 106 37.7
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.1e-07 60.8 37 73.0


User provided reference genes

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