Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-227 792.0 412 100.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.0e-219 766.5 409 97.1
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-218 762.7 409 96.6
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.6e-217 758.1 409 96.8
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.2e-201 704.1 409 91.9
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-195 685.6 409 89.2
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 8.1e-193 677.2 420 86.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.4e-184 649.0 420 83.8
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.6e-167 592.4 418 75.1
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.4e-165 586.6 420 74.3
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.1e-160 568.9 420 72.1
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 8.8e-155 550.8 420 71.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.5e-154 550.1 420 71.0
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.8e-153 545.0 419 70.4
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.3e-152 541.6 420 69.3
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.9e-152 541.2 420 70.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 9.1e-152 540.8 417 70.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 7.7e-151 537.7 420 69.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.3e-150 537.0 418 69.9
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.0e-150 535.0 420 68.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.4e-149 533.5 420 67.6
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.4e-149 533.5 420 68.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 9.4e-149 530.8 420 68.3
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.6e-148 528.9 420 67.9
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.0e-147 527.3 422 66.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.0e-146 523.1 420 68.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.2e-145 519.6 420 66.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.8e-145 518.5 420 66.9
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 4.8e-145 518.5 420 66.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.6e-143 512.7 419 66.1
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.5e-143 512.3 420 65.5
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.5e-143 511.9 421 65.6
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.0e-142 510.8 417 65.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.5e-141 506.9 417 65.2
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.5e-141 506.9 417 65.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.9e-141 506.5 419 65.2
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.5e-141 506.1 418 65.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 3.2e-141 505.8 422 65.6
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 4.2e-141 505.4 409 65.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.2e-140 503.8 420 65.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.2e-140 503.8 418 64.6
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.6e-140 503.4 421 66.5
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.1e-140 503.1 420 64.3
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.7e-140 502.7 420 65.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.7e-140 502.7 420 66.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 8.0e-140 501.1 417 64.3
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 8.0e-140 501.1 415 65.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 8.0e-140 501.1 438 63.0
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.4e-139 500.4 418 64.4
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-139 500.4 417 65.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-139 500.4 417 65.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.4e-139 500.4 420 66.4
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.8e-139 500.0 421 65.3
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.0e-139 499.2 418 64.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.0e-139 499.2 420 63.8
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 3.0e-139 499.2 412 64.6
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.0e-139 499.2 417 63.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.5e-138 494.6 420 63.1
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.7e-138 494.2 419 64.0
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 9.7e-138 494.2 420 65.2
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.3e-137 493.8 420 65.2
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.7e-137 493.4 422 63.0
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.2e-137 493.0 420 66.7
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.8e-137 492.7 416 65.1
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.7e-137 492.3 412 65.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.7e-137 492.3 415 64.1
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.8e-137 491.9 430 62.1
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.8e-137 491.9 369 71.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 4.8e-137 491.9 420 65.0
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.3e-137 491.5 425 65.2
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.1e-136 490.7 421 65.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.2e-135 487.3 420 63.8
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 5.9e-135 485.0 420 63.6
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 5.9e-135 485.0 421 64.1
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.3e-134 483.8 415 63.1
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.1e-132 476.5 422 64.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.8e-131 473.4 421 62.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.8e-131 473.4 420 61.9
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 5.2e-131 471.9 369 68.6
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.0e-130 469.9 446 61.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.6e-130 469.5 368 68.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.7e-130 468.4 370 67.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 3.7e-129 465.7 417 62.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 4.8e-129 465.3 418 62.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.4e-128 463.0 417 61.9
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.4e-128 461.8 418 62.0
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.2e-127 460.7 427 60.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.0e-127 459.9 419 61.1
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 4.5e-127 458.8 417 62.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.9e-127 458.4 421 59.1
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 7.7e-127 458.0 417 61.9
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 2.2e-126 456.4 418 61.2
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 5.0e-126 455.3 419 61.1
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 5.0e-126 455.3 419 61.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 6.5e-126 454.9 420 60.5
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-125 453.8 421 60.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-125 453.8 419 60.6
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.5e-125 453.8 418 59.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-125 453.0 419 60.4
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 7.2e-125 451.4 419 60.4
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.7e-124 448.7 373 66.5
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.1e-124 448.4 414 61.4
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.0e-123 446.0 414 61.6
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.0e-123 445.7 420 59.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-122 444.1 420 59.3
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-122 443.7 422 59.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.6e-122 443.0 414 60.9
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.6e-122 443.0 420 59.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.4e-120 437.2 414 59.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.5e-117 426.4 415 58.3
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 9.5e-117 424.5 411 59.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.4e-115 420.6 369 62.1
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.2e-111 407.5 418 56.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.2e-111 407.5 409 57.0
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-110 404.4 329 70.5
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.4e-107 394.0 426 54.0
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 5.2e-107 392.1 420 53.3
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.9e-107 391.3 411 54.5
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.0e-106 390.2 424 52.8
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.9e-105 386.3 420 53.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.0e-102 376.3 409 52.6
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.3e-101 372.9 411 53.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 3.6e-100 369.4 431 51.5
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.3e-94 350.1 303 62.7
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 4.3e-85 319.3 327 51.7
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.8e-84 316.6 448 46.0
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.8e-82 308.9 258 64.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.4e-75 287.0 297 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.0e-74 283.9 399 44.6
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 5.8e-74 282.3 470 39.6
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.1e-62 242.7 418 39.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.2e-48 196.8 144 76.4
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 4.2e-48 196.4 491 32.2
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.6e-47 193.4 168 63.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 9.7e-45 185.3 243 45.7
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.3e-44 182.6 131 73.3
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.2e-41 174.1 128 76.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-38 165.2 200 50.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-29 132.9 149 55.0
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-26 124.8 89 78.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-25 122.1 155 50.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.8e-25 120.2 412 28.9
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.6e-23 113.6 138 52.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-22 110.9 120 54.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.3e-22 110.9 209 35.4
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.5e-21 108.2 213 37.1
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-19 101.3 82 63.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.2e-18 98.6 108 52.8
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 3.5e-18 97.1 99 55.6
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-17 95.1 98 55.1
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.9e-17 94.0 79 67.1
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-17 92.8 127 51.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-15 88.6 127 49.6
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.3e-14 84.3 106 45.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-13 79.7 125 46.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.2e-12 77.8 41 90.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.8e-12 76.6 49 71.4
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 8.3e-12 75.9 81 51.9
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.7e-10 69.3 51 62.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.2e-09 67.8 100 46.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-09 67.4 36 94.4
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 5.0e-09 66.6 42 81.0
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 8.0e-07 59.3 77 44.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 3.0e-06 57.4 38 73.7


User provided reference genes

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