Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-232 808.5 429 100.0
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-196 689.5 413 92.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-192 676.4 413 90.8
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.1e-183 644.4 413 87.4
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-182 643.3 413 86.2
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.9e-182 641.7 402 89.3
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 3.2e-107 392.9 420 59.3
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-104 381.3 419 59.4
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 6.2e-95 352.1 440 54.5
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.8e-87 326.6 460 50.4
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.8e-86 323.9 446 51.6
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 4.0e-86 322.8 443 51.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.3e-86 322.4 444 52.7
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 6.5e-84 315.5 464 51.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 8.4e-84 315.1 439 50.8
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.5e-82 309.7 437 51.5
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 7.9e-82 308.5 447 51.5
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.8e-81 307.4 455 49.7
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 3.0e-81 306.6 456 48.9
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 2.1e-79 300.4 462 49.4
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.1e-79 300.4 443 50.6
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.1e-79 300.4 446 48.2
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.7e-79 299.7 452 51.1
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.1e-78 298.1 461 50.1
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 5.3e-78 295.8 445 48.8
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 3.4e-77 293.1 443 48.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.8e-77 292.4 427 47.3
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 5.8e-77 292.4 427 47.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 5.8e-77 292.4 434 49.8
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.6e-77 292.0 443 47.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 7.6e-77 292.0 456 48.0
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.0e-76 289.3 457 45.3
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 9.3e-75 285.0 442 49.5
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 6.1e-74 282.3 439 46.2
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.0e-73 281.6 444 51.4
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.1e-72 278.1 443 44.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 2.8e-71 273.5 472 43.0
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 6.3e-71 272.3 461 47.3
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 3.1e-70 270.0 366 48.6
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-69 268.1 372 50.0
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.6e-69 266.9 412 45.4
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 4.5e-69 266.2 437 46.9
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 7.7e-69 265.4 443 48.5
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.3e-68 264.6 396 48.7
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.7e-68 264.2 451 47.7
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.8e-68 263.1 443 46.5
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 3.8e-68 263.1 523 42.8
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 3.8e-68 263.1 451 42.8
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.1e-67 261.5 463 45.1
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.2e-67 260.0 459 46.4
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 4.2e-67 259.6 418 45.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.5e-67 259.2 418 45.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 7.2e-67 258.8 421 45.6
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 9.4e-67 258.5 438 43.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.2e-66 258.1 442 44.1
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.6e-66 256.5 490 43.7
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.6e-66 256.1 423 45.2
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 6.1e-66 255.8 447 45.0
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 6.1e-66 255.8 423 44.9
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 7.9e-66 255.4 390 45.4
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-65 255.0 428 45.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.8e-65 254.2 426 44.4
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.8e-65 254.2 426 45.1
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.3e-65 253.8 442 45.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-65 252.7 418 45.2
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-65 252.7 386 45.1
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 5.1e-65 252.7 386 45.1
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 5.1e-65 252.7 430 45.1
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.5e-64 251.1 425 44.2
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.5e-64 251.1 425 43.8
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.0e-64 250.8 440 43.9
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 2.5e-64 250.4 453 41.5
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 2.5e-64 250.4 304 52.0
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-63 248.1 268 55.6
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 2.8e-63 246.9 397 44.6
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.8e-63 246.9 343 48.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.7e-63 246.5 438 43.2
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.4e-62 244.6 427 45.9
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.4e-62 244.6 448 45.3
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.4e-62 244.6 390 45.4
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 9.1e-62 241.9 420 45.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.0e-61 240.7 408 43.1
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 2.6e-61 240.4 424 42.9
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.6e-61 240.4 365 46.0
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-61 240.0 365 45.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.5e-61 239.6 423 42.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 5.9e-61 239.2 493 42.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 5.9e-61 239.2 436 42.2
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 7.7e-61 238.8 422 45.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.8e-60 236.5 425 41.2
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.8e-60 236.5 453 43.5
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 5.0e-60 236.1 423 44.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 6.5e-60 235.7 443 43.8
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 6.5e-60 235.7 220 60.9
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-59 234.6 451 38.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.2e-59 233.4 435 41.4
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 9.4e-59 231.9 464 43.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 9.4e-59 231.9 370 44.6
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.2e-58 231.5 611 39.0
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.6e-58 231.1 441 43.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.1e-58 230.7 450 39.3
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.7e-58 230.3 440 43.4
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.7e-58 229.6 408 41.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 6.1e-58 229.2 374 44.7
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.0e-57 228.4 335 48.4
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.4e-57 228.0 396 40.9
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.4e-57 228.0 400 41.2
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 5.1e-57 226.1 444 41.7
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 6.7e-57 225.7 431 41.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.1e-56 224.9 425 44.0
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.3e-56 223.4 349 47.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 5.7e-56 222.6 341 45.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 5.7e-56 222.6 472 39.6
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 7.4e-56 222.2 344 47.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.1e-54 218.4 465 39.6
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 4.5e-53 213.0 443 44.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.5e-53 213.0 355 43.9
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.7e-52 211.1 329 43.8
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 3.8e-52 209.9 365 43.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 3.8e-52 209.9 400 41.5
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.7e-50 203.8 268 48.1
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 6.1e-50 202.6 366 42.6
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 8.0e-50 202.2 132 81.1
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.6e-45 188.0 420 35.7
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.6e-45 188.0 199 58.3
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 2.0e-45 187.6 404 39.4
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.8e-44 183.3 105 88.6
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.8e-44 183.3 105 88.6
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 5.0e-44 183.0 381 38.3
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 6.5e-44 182.6 97 91.8
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.5e-43 179.5 108 85.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.3e-41 174.1 112 78.6
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.3e-41 174.1 112 78.6
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.0e-41 173.7 112 83.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-35 154.8 289 40.5
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.5e-35 154.8 331 39.9
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.1e-34 149.4 90 82.2
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 9.1e-30 135.6 135 51.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.6e-29 134.8 130 54.6
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.6e-29 134.8 71 94.4
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.7e-26 123.2 309 38.5
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.1e-22 112.1 294 37.8
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.1e-22 112.1 113 55.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.9e-21 106.3 59 89.8
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 2.3e-20 104.4 56 89.3
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.1e-19 102.1 318 33.3
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 2.5e-19 100.9 65 81.5
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.8e-17 92.8 286 38.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.2e-16 92.0 105 47.6
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 3.4e-16 90.5 109 48.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.2e-14 84.0 94 51.1
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.0e-13 81.3 108 45.4
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.7e-13 80.9 56 71.4
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.8e-09 66.2 274 30.3
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 6.8e-09 66.2 88 48.9
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-08 65.1 31 96.8
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.3e-07 62.0 67 52.2
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.4e-07 59.7 290 32.4
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 8.3e-07 59.3 98 40.8
FAN02G3314 Fragaria x ananassa HOM05D008754 ORTHO05D013321 1.1e-06 58.9 81 45.7
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.4e-06 58.5 123 28.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.1e-06 56.2 47 59.6
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 9.2e-06 55.8 31 77.4


User provided reference genes

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