Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.9e-216 755.0 397 100.0
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 2.5e-199 698.7 421 88.4
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.0e-197 691.4 415 89.6
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.1e-193 679.1 440 83.2
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 9.9e-180 633.6 354 94.1
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 7.5e-103 378.3 434 53.5
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 7.5e-87 325.1 432 50.9
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 2.4e-85 320.1 434 48.2
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 3.0e-83 313.2 436 48.4
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 8.6e-83 311.6 189 86.2
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 6.0e-76 288.9 428 45.8
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 3.9e-75 286.2 412 46.8
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 9.3e-69 265.0 436 43.1
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.6e-68 264.2 450 42.7
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 5.6e-66 255.8 193 73.6
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 3.6e-65 253.1 391 45.3
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 8.1e-65 251.9 429 40.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 9.0e-64 248.4 436 40.1
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 1.3e-62 244.6 437 41.2
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.2e-62 243.8 430 42.8
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.9e-61 240.7 438 40.6
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 5.4e-61 239.2 446 39.9
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 5.4e-61 239.2 450 38.9
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 3.9e-59 233.0 440 39.1
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.5e-58 231.1 434 41.0
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 2.5e-58 230.3 431 40.1
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 7.3e-58 228.8 435 40.0
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 9.6e-58 228.4 437 38.2
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 1.3e-57 228.0 433 37.9
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.3e-57 228.0 383 40.5
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 3.6e-57 226.5 427 38.4
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.4e-56 224.6 420 41.0
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 6.9e-56 222.2 443 37.7
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 9.0e-56 221.9 423 40.0
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.2e-54 217.2 435 38.9
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 2.9e-54 216.9 431 39.2
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 8.4e-54 215.3 502 35.7
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 1.4e-53 214.5 433 37.6
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 7.1e-53 212.2 504 36.1
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 6.0e-52 209.1 498 36.1
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 3.0e-51 206.8 279 46.2
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.1e-50 204.9 368 38.6
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 6.2e-49 199.1 367 40.9
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 2.4e-48 197.2 436 36.0
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 6.9e-48 195.7 441 36.1
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 7.6e-47 192.2 435 37.0
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 2.9e-46 190.3 450 37.1
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 4.9e-46 189.5 419 33.2
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.1e-45 188.3 279 45.5
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 1.4e-45 188.0 440 37.3
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 3.2e-45 186.8 432 35.0
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 2.7e-44 183.7 448 33.5
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 6.0e-44 182.6 440 34.8
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 1.8e-43 181.0 399 37.6
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 7.4e-42 175.6 91 94.5
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 3.7e-41 173.3 458 33.0
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 1.4e-40 171.4 444 33.6
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 4.1e-40 169.9 408 34.6
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 4.1e-40 169.9 341 39.3
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 9.0e-40 168.7 440 36.6
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 2.6e-39 167.2 462 33.8
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 7.6e-39 165.6 393 34.4
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 1.3e-38 164.9 370 36.2
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.7e-38 164.5 457 32.8
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 2.9e-38 163.7 433 33.5
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 5.0e-38 162.9 311 38.9
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 4.2e-37 159.8 302 40.4
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 1.2e-36 158.3 443 31.8
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 3.5e-36 156.8 401 34.7
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 4.6e-36 156.4 407 33.4
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 1.3e-35 154.8 374 34.0
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 3.0e-35 153.7 388 37.1
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.7e-35 152.5 502 30.3
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 8.7e-35 152.1 458 30.8
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 1.5e-34 151.4 426 32.9
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 9.7e-34 148.7 446 33.2
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 1.6e-33 147.9 449 33.0
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 3.1e-32 143.7 435 29.7
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 5.3e-32 142.9 447 30.9
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 2.6e-31 140.6 400 33.2
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 2.6e-31 140.6 423 34.8
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 2.1e-28 131.0 250 37.6
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 2.1e-28 131.0 438 29.7
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 7.9e-28 129.0 422 30.6
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 7.9e-28 129.0 401 33.7
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 3.0e-27 127.1 438 31.3
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 3.0e-27 127.1 436 30.0
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 1.1e-26 125.2 433 29.1
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 4.3e-26 123.2 123 56.1
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 5.7e-26 122.9 378 31.7
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 9.7e-26 122.1 247 36.8
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 9.7e-26 122.1 243 36.2
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.7e-25 121.3 411 29.9
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.2e-25 120.9 247 36.8
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.8e-25 120.6 309 34.6
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 2.4e-24 117.5 418 29.4
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 2.4e-24 117.5 379 30.3
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 3.1e-24 117.1 253 34.8
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 3.1e-24 117.1 322 31.7
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 1.3e-22 111.7 248 35.5
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 8.5e-22 109.0 535 26.5
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 2.5e-21 107.5 358 29.6
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 3.2e-21 107.1 336 29.2
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 9.4e-21 105.5 384 29.2
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 3.6e-20 103.6 413 28.3
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 2.2e-17 94.4 349 30.9
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 4.8e-17 93.2 486 26.1
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 1.2e-15 88.6 293 32.8
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 1.0e-11 75.5 349 24.9
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 9.7e-10 68.9 42 69.0
TAR626G0200 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.3e-09 68.6 151 37.1
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 3.1e-08 63.9 179 35.2
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 7.7e-07 59.3 252 28.2
SMO356G0193 Selaginella moellendorffii HOM05D005864 ORTHO05D006770 1.3e-06 58.5 232 28.0
TAR375G0046 Trochodendron aralioides HOM05D005864 ORTHO05D006770 6.5e-06 56.2 38 65.8


User provided reference genes

Program Settings