Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-160 569.7 292 100.0
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 1.9e-148 529.3 279 96.8
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-147 526.6 279 96.4
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.8e-141 506.1 280 93.9
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 1.8e-114 416.4 281 79.0
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.2e-113 413.7 282 78.4
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.6e-105 386.0 283 72.4
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 6.5e-104 381.3 281 70.8
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.1e-100 370.5 280 70.4
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 9.7e-100 367.5 281 68.3
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 2.2e-99 366.3 226 80.1
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.4e-98 363.6 287 67.2
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 5.3e-98 361.7 281 66.5
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 7.0e-98 361.3 281 66.5
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.2e-97 360.5 280 66.8
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 7.7e-97 357.8 281 67.3
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.0e-96 357.5 267 69.7
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.2e-96 356.3 275 68.0
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.9e-96 355.9 249 69.1
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 3.8e-96 355.5 271 69.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.8e-96 355.5 279 66.3
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 8.5e-96 354.4 273 66.3
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.5e-95 353.6 331 59.2
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 2.5e-95 352.8 280 67.1
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 3.2e-95 352.4 280 65.4
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 4.2e-95 352.1 274 67.9
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 9.4e-95 350.9 276 65.9
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 2.1e-94 349.7 279 64.9
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 3.6e-94 349.0 288 63.2
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 8.0e-94 347.8 247 70.9
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.3e-93 346.3 272 66.2
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.2e-93 345.1 276 65.2
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 6.8e-93 344.7 283 64.7
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 6.8e-93 344.7 277 65.0
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 8.8e-93 344.4 238 71.4
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 1.5e-92 343.6 237 71.3
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 3.4e-92 342.4 289 64.4
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.4e-92 342.0 274 65.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.7e-91 340.1 284 65.5
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.2e-91 339.7 277 65.3
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.4e-90 336.3 235 69.8
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 3.1e-90 335.9 288 61.5
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 7.0e-90 334.7 255 66.7
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.2e-89 334.0 218 75.7
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.7e-89 332.8 235 67.7
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 5.9e-89 331.6 261 64.4
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.7e-88 330.1 235 68.1
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 2.9e-88 329.3 235 67.7
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.5e-87 327.0 256 64.1
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.5e-87 327.0 273 61.9
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.9e-87 326.6 335 56.1
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 3.2e-87 325.9 255 65.5
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 5.5e-87 325.1 250 65.2
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 9.5e-87 324.3 285 60.7
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 6.1e-86 321.6 249 66.7
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 8.0e-86 321.2 280 60.4
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 4.0e-85 318.9 226 69.0
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.5e-84 317.0 239 64.0
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.0e-84 316.6 277 59.9
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.0e-84 316.6 236 67.8
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 4.4e-84 315.5 286 58.7
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 7.5e-84 314.7 282 59.9
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 2.2e-83 313.2 277 61.4
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 2.8e-83 312.8 292 57.2
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 3.7e-83 312.4 268 61.9
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 4.1e-82 308.9 275 59.6
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 7.0e-82 308.1 244 66.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 9.2e-82 307.8 243 63.8
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 1.6e-81 307.0 285 58.6
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 1.6e-81 307.0 285 58.6
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.6e-81 307.0 235 64.7
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 2.0e-81 306.6 240 65.0
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 2.7e-81 306.2 221 69.2
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.5e-81 305.8 243 62.6
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.0e-80 304.3 285 58.6
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.5e-79 300.4 283 59.0
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.9e-79 300.1 236 64.4
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.5e-79 299.7 243 63.4
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 9.5e-79 297.7 281 60.5
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.2e-78 297.4 241 63.1
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.1e-78 296.6 304 54.3
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.1e-78 296.6 304 54.3
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.8e-77 293.5 296 56.4
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 3.0e-77 292.7 219 69.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 6.8e-77 291.6 235 62.6
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.7e-75 287.0 281 58.0
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.4e-74 283.9 281 57.7
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.0e-72 276.2 207 66.7
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.7e-67 259.2 139 95.0
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 7.0e-66 255.0 208 61.5
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.2e-62 244.2 172 70.9
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.2e-62 244.2 185 67.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.2e-60 237.7 236 53.8
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.5e-60 237.3 169 69.2
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 5.8e-60 235.3 288 47.6
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 1.0e-56 224.6 279 50.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.2e-54 217.6 209 56.9
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 4.7e-54 215.7 149 70.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.4e-53 214.2 169 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.7e-51 207.2 202 55.0
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 9.2e-50 201.4 249 43.0
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 3.2e-42 176.4 191 55.5
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 5.1e-32 142.5 147 51.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.5e-28 131.0 110 59.1
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 8.4e-19 98.6 56 85.7
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 5.5e-18 95.9 56 85.7
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.6e-17 94.4 242 32.6
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.3e-16 91.3 252 32.1
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.9e-11 73.6 208 28.8
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.8e-11 73.2 169 31.4
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 4.3e-07 59.7 317 25.2
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 5.7e-07 59.3 231 26.8
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.3e-06 58.2 223 25.6
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 1.6e-06 57.8 223 28.3
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 1.6e-06 57.8 223 27.4
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 2.2e-06 57.4 223 26.9
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 2.2e-06 57.4 223 26.9
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 2.2e-06 57.4 223 26.0
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 2.8e-06 57.0 224 28.1
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 2.8e-06 57.0 272 23.5
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 2.8e-06 57.0 223 26.5
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 3.7e-06 56.6 234 25.6
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 3.7e-06 56.6 248 25.4
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 4.8e-06 56.2 213 27.2
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 4.8e-06 56.2 215 26.5
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 4.8e-06 56.2 193 27.5
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 4.8e-06 56.2 213 26.3
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 4.8e-06 56.2 229 26.6
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 4.8e-06 56.2 223 26.9
Aa31LG2G18820 Aethionema arabicum HOM05D006655 ORTHO05D007986 6.3e-06 55.8 239 26.4
COL.COLO4_04115 Corchorus olitorius HOM05D006655 ORTHO05D007986 6.3e-06 55.8 223 26.0
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 6.3e-06 55.8 223 26.5
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 6.3e-06 55.8 223 26.5
Aqoxy1G00312 Aquilegia oxysepala HOM05D006655 ORTHO05D007986 8.2e-06 55.5 261 24.9
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 8.2e-06 55.5 223 25.6
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 8.2e-06 55.5 223 27.4
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 8.2e-06 55.5 223 26.0


User provided reference genes

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