Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.4e-111 405.6 306 100.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 5.1e-107 391.7 306 87.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-106 390.6 306 83.3
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-106 390.6 306 86.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 6.4e-102 374.8 308 91.6
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-97 359.8 306 85.9
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 2.1e-81 306.6 304 84.5
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 6.9e-80 301.6 304 67.4
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 9.3e-77 291.2 320 61.6
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 5.1e-75 285.4 307 63.8
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 6.7e-75 285.0 305 63.3
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 6.7e-75 285.0 305 64.6
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.5e-74 283.9 297 81.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.3e-74 282.7 309 57.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 5.6e-74 282.0 313 64.2
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 4.8e-73 278.9 306 59.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 6.2e-73 278.5 307 59.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.2e-73 278.5 307 59.0
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.1e-72 277.7 307 61.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.4e-72 277.3 305 60.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 2.4e-72 276.6 306 58.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.5e-71 273.9 306 59.2
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.9e-70 269.6 311 58.2
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.9e-70 269.6 306 58.5
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 3.8e-70 269.2 306 59.5
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 8.4e-70 268.1 310 56.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.2e-69 265.8 310 61.6
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.2e-69 265.8 305 52.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.2e-69 265.8 336 68.2
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.6e-68 263.8 312 55.4
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.1e-68 263.5 306 73.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.5e-68 262.7 306 60.1
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 4.6e-68 262.3 310 57.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 4.6e-68 262.3 306 71.2
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 6.0e-68 261.9 306 73.5
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 6.0e-68 261.9 306 56.9
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 7.9e-68 261.5 309 55.7
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.0e-67 261.2 309 55.0
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 5.1e-67 258.8 309 56.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 5.1e-67 258.8 307 59.9
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 6.7e-67 258.5 309 57.6
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 6.7e-67 258.5 308 53.9
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 8.7e-67 258.1 279 59.5
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 8.7e-67 258.1 305 60.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 8.7e-67 258.1 305 53.1
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.5e-66 257.3 297 65.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.3e-66 256.1 306 63.4
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.3e-66 256.1 308 53.6
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.7e-66 255.4 305 70.5
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.6e-66 254.6 306 57.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 3.7e-65 252.7 308 69.2
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.7e-65 252.7 320 51.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 8.2e-65 251.5 306 56.5
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 8.2e-65 251.5 305 52.8
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.1e-64 251.1 309 54.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.4e-64 250.0 311 55.9
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 2.4e-64 250.0 305 72.1
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 2.4e-64 250.0 305 72.1
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.1e-64 249.6 309 49.2
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.1e-64 249.6 283 63.3
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 5.3e-64 248.8 274 52.6
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 5.3e-64 248.8 306 50.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.0e-63 246.9 313 68.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.4e-63 246.1 315 67.6
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 5.8e-63 245.4 322 54.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.8e-63 245.4 307 68.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.9e-62 243.0 344 53.8
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.8e-62 242.7 307 55.4
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 8.4e-62 241.5 305 57.0
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 7.1e-61 238.4 306 51.6
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 9.3e-61 238.0 305 47.5
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 3.5e-60 236.1 300 52.7
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.6e-60 235.7 305 46.9
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.3e-59 234.2 311 69.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.1e-58 231.1 312 54.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.1e-58 231.1 307 55.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.9e-58 230.3 297 48.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 2.8e-57 226.5 290 51.4
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 3.7e-57 226.1 252 60.3
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 6.3e-57 225.3 324 53.7
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 9.0e-56 221.5 309 62.8
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.0e-56 221.5 309 62.8
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.0e-56 221.5 309 62.8
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 7.7e-55 218.4 309 55.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 7.7e-55 218.4 308 65.3
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.0e-54 218.0 310 68.1
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.2e-54 216.9 302 55.3
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.2e-54 216.9 309 56.3
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.2e-54 216.9 309 56.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.8e-54 216.1 300 67.3
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 6.5e-54 215.3 288 49.0
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-53 214.5 309 65.7
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.1e-53 214.5 307 64.8
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.4e-53 214.2 292 50.0
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.2e-53 211.8 308 62.3
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 6.1e-52 208.8 347 51.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 7.9e-52 208.4 200 62.0
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 3.9e-51 206.1 337 49.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.0e-50 203.8 224 60.3
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.0e-50 203.8 278 54.0
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 2.2e-49 200.3 343 50.1
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 3.7e-49 199.5 299 49.2
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 8.2e-49 198.4 307 50.2
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 7.7e-47 191.8 318 52.8
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.8e-46 189.5 367 52.0
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.8e-46 189.5 189 53.4
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.3e-43 180.3 276 62.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.4e-42 176.0 306 51.0
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-35 153.7 105 68.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.0e-34 150.6 272 38.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.0e-32 142.1 189 46.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.5e-29 133.7 105 66.7
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 6.8e-27 125.6 149 71.1
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-24 118.2 228 39.0
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.8e-24 117.5 80 70.0
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.5e-23 112.8 186 38.2
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.1e-21 108.2 153 39.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 9.4e-21 105.1 135 60.7
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.7e-17 93.2 137 40.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 7.0e-16 89.0 115 57.4
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-13 81.3 48 79.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.9e-13 80.9 136 47.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.6e-12 76.6 56 76.8
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-10 71.2 95 63.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.4e-10 69.7 91 54.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 9.8e-10 68.6 45 71.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.2e-09 67.4 43 72.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.2e-09 67.4 43 72.1
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.2e-08 63.5 30 86.7
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 5.4e-08 62.8 40 67.5
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 7.0e-08 62.4 40 67.5
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.6e-07 59.7 29 86.2
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.9e-07 59.3 59 54.2
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 2.9e-06 57.0 66 40.9


User provided reference genes

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