Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-163 578.9 292 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 5.2e-162 574.3 292 99.0
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-161 572.8 292 98.6
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.3e-159 563.5 306 94.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-154 549.7 291 95.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.3e-141 506.5 293 87.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.9e-141 505.0 291 86.9
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.8e-139 498.8 292 85.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 4.6e-134 481.5 299 82.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 7.9e-134 480.7 294 83.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.4e-130 469.2 299 80.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 6.9e-130 467.6 295 81.4
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.9e-129 464.5 298 78.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 7.6e-129 464.2 297 80.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.3e-128 463.4 297 80.1
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.2e-128 462.6 297 80.8
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.4e-127 459.9 300 79.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 4.2e-127 458.4 299 79.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.7e-126 455.7 298 79.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.7e-126 455.7 297 79.1
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 7.9e-126 454.1 298 78.9
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.8e-125 453.0 294 78.2
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.0e-125 452.2 298 78.5
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 8.7e-125 450.7 299 76.9
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.5e-124 449.9 299 78.9
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.7e-124 448.0 299 78.6
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 7.4e-124 447.6 299 77.6
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.3e-123 446.8 299 77.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 3.7e-123 445.3 292 79.1
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.1e-122 442.2 309 75.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.0e-121 439.5 292 77.7
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.0e-121 439.5 301 77.4
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.3e-120 436.8 292 78.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.8e-120 435.3 292 77.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.5e-120 434.5 297 77.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 8.5e-120 434.1 289 77.5
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.1e-119 433.7 298 75.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.1e-119 433.7 295 78.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.9e-119 433.0 300 73.3
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.2e-119 432.2 296 75.7
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.2e-119 431.0 297 76.4
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.4e-119 430.6 293 76.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-118 430.3 267 81.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.6e-118 429.9 271 80.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.1e-118 429.5 298 75.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 6.1e-118 427.9 291 76.6
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.9e-118 427.6 299 76.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 3.0e-117 425.6 295 75.9
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.0e-117 425.6 271 80.1
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 3.0e-117 425.6 293 76.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.1e-117 424.9 295 75.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.1e-117 424.9 299 75.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.7e-117 424.5 293 76.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 6.7e-117 424.5 292 76.4
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 8.8e-117 424.1 290 74.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-116 423.7 297 75.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-116 423.3 292 73.6
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.0e-116 422.9 296 75.7
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.4e-116 421.0 296 75.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 7.4e-116 421.0 294 73.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 7.4e-116 421.0 297 72.7
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-115 420.2 291 74.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.7e-115 419.9 267 80.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.7e-115 418.7 292 72.9
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 6.3e-115 417.9 294 74.8
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.3e-115 417.9 291 74.2
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 8.2e-115 417.5 290 73.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.8e-114 416.4 291 75.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.4e-114 416.0 289 75.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.4e-114 416.0 290 74.1
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.1e-114 415.6 273 79.1
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.1e-114 415.2 293 74.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 4.1e-114 415.2 290 72.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.0e-113 412.9 293 74.7
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.0e-113 412.9 292 74.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.0e-113 412.9 286 76.2
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.5e-113 411.8 293 76.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.5e-113 411.8 314 71.0
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.5e-113 411.8 316 70.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 4.5e-113 411.8 291 74.9
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 4.5e-113 411.8 292 74.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.7e-113 411.0 295 73.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.3e-112 410.2 282 76.2
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-112 410.2 256 83.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 3.8e-112 408.7 296 73.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-111 407.1 297 74.4
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-111 407.1 282 75.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.9e-111 406.4 283 77.0
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.5e-111 406.0 293 73.0
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 7.2e-111 404.4 347 65.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.7e-110 402.5 297 71.4
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-109 399.4 295 73.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 6.7e-109 397.9 245 84.1
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.8e-109 397.5 252 81.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.4e-108 395.2 275 74.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.4e-108 394.4 275 74.5
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.3e-107 393.7 290 72.8
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.7e-107 393.3 244 82.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.7e-107 393.3 304 70.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.8e-107 392.5 294 73.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 6.3e-107 391.3 244 82.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 8.2e-107 391.0 244 82.0
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.4e-106 389.4 274 76.3
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.3e-106 388.3 299 69.2
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 5.9e-105 384.8 263 76.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.5e-103 380.2 254 78.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.5e-103 378.3 218 87.6
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 7.2e-103 377.9 291 68.7
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 8.0e-102 374.4 247 80.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.4e-101 373.6 246 78.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.0e-101 372.5 311 66.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.7e-99 365.5 299 66.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.1e-98 364.0 254 74.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.1e-98 364.0 253 76.3
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 5.9e-97 358.2 244 77.9
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-96 357.5 292 67.5
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.4e-92 342.4 286 65.0
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.4e-92 342.0 179 97.2
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.3e-91 338.2 291 64.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 6.3e-91 338.2 224 79.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 6.3e-91 338.2 279 65.9
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.5e-89 332.0 293 62.8
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 7.2e-87 324.7 273 64.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.5e-84 317.0 235 72.8
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 4.1e-82 308.9 246 67.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.5e-81 305.4 211 74.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.0e-80 302.0 179 82.7
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 6.6e-80 301.6 215 75.3
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.5e-79 300.4 317 52.4
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.7e-78 295.4 254 63.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.2e-76 290.8 308 53.2
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.6e-76 289.7 255 69.0
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.3e-75 287.3 305 52.5
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.3e-71 272.3 211 64.9
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.5e-71 271.2 272 55.5
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.6e-70 269.2 271 56.8
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.3e-69 266.5 250 58.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.3e-69 266.5 179 73.7
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.0e-69 265.8 252 59.1
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.4e-68 262.7 177 71.2
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 8.3e-67 258.1 177 78.0
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.2e-61 238.8 163 73.0
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.8e-60 234.6 201 63.7
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 6.4e-59 231.9 139 82.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.2e-49 201.1 239 46.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.8e-49 198.4 158 68.4
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.5e-47 194.1 143 71.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-43 180.3 89 97.8
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.2e-42 176.4 120 79.2
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.6e-39 165.6 112 76.8
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.5e-31 140.2 82 82.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.3e-31 139.4 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-27 127.5 64 95.3
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.6e-25 120.9 66 93.9
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-18 96.7 89 61.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.4e-13 81.3 107 50.5
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.2e-11 73.9 48 77.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.2e-11 73.9 48 75.0
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.3e-06 58.2 63 52.4


User provided reference genes

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