Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.7e-231 803.5 445 100.0
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.4e-226 786.9 442 99.1
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-217 759.2 449 92.7
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.5e-217 758.8 445 92.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.2e-217 758.1 448 92.4
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.0e-191 673.7 390 87.2
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 9.2e-164 580.9 393 72.8
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.1e-161 573.9 391 72.9
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 6.8e-159 564.7 391 71.6
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.6e-152 543.5 392 68.4
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.4e-151 540.4 391 67.0
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 3.4e-150 535.8 387 67.7
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 2.1e-144 516.5 392 64.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 8.9e-143 511.1 444 59.0
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 7.1e-140 501.5 392 63.3
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 4.6e-139 498.8 408 64.2
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.7e-138 496.9 395 63.0
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.6e-138 495.0 389 61.7
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 4.3e-137 492.3 394 61.7
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 4.3e-137 492.3 399 63.4
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 7.3e-137 491.5 386 63.5
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.7e-136 488.8 395 60.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 8.1e-136 488.0 394 59.9
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.8e-135 486.9 392 61.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.8e-135 486.9 382 62.3
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.3e-135 486.5 391 60.6
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 8.9e-135 484.6 390 60.3
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.5e-134 483.8 392 61.0
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.4e-134 482.6 393 59.3
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.4e-134 482.3 392 60.5
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 9.9e-134 481.1 392 60.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 4.9e-133 478.8 389 60.7
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 7.1e-132 474.9 388 60.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 7.8e-131 471.5 446 57.8
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 3.0e-130 469.5 389 59.1
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 5.1e-130 468.8 393 60.8
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.1e-129 467.6 392 58.4
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.5e-129 467.2 399 58.1
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 7.3e-129 464.9 391 59.1
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 7.3e-129 464.9 394 59.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.6e-128 463.8 389 59.6
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.1e-128 463.4 399 58.6
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.1e-128 463.4 399 58.6
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 6.2e-128 461.8 398 56.5
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 3.1e-127 459.5 395 57.7
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.6e-126 456.4 393 59.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 3.4e-126 456.1 395 59.0
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 4.4e-126 455.7 395 57.2
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 4.4e-126 455.7 395 57.2
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 4.4e-126 455.7 395 57.2
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 9.9e-126 454.5 393 59.3
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.3e-125 454.1 395 57.2
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.7e-125 453.8 451 55.4
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 3.8e-125 452.6 397 57.9
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 6.4e-125 451.8 380 58.9
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 6.4e-125 451.8 392 58.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.4e-124 449.9 393 56.7
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.6e-123 447.2 447 58.8
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.1e-123 446.8 450 53.1
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 2.7e-123 446.4 391 55.5
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.5e-123 446.0 345 63.2
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 6.0e-123 445.3 382 57.6
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 7.8e-123 444.9 396 55.1
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.3e-122 443.4 392 55.1
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 6.6e-122 441.8 395 57.0
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.5e-121 440.7 391 54.7
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 4.3e-121 439.1 393 56.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 9.6e-121 438.0 393 57.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.4e-119 433.3 458 52.8
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 9.0e-119 431.4 345 62.0
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.7e-117 427.2 395 54.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.4e-116 423.3 397 53.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.2e-116 422.5 345 61.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 7.1e-116 421.8 392 53.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.6e-115 419.1 371 58.0
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.9e-115 418.3 348 59.2
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.9e-115 418.3 348 59.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.8e-114 417.2 395 53.2
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 3.9e-114 416.0 344 57.6
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.5e-113 414.1 398 55.3
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 5.6e-113 412.1 448 51.1
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 6.9e-111 405.2 345 59.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 9.0e-111 404.8 318 61.6
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.6e-110 403.3 345 59.4
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 4.2e-108 396.0 396 51.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 5.5e-108 395.6 401 48.9
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.6e-107 394.0 347 56.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 1.0e-106 391.3 331 58.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.0e-106 391.3 313 60.7
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.9e-105 387.1 400 49.8
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.6e-102 376.7 312 58.0
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 5.5e-92 342.4 371 45.0
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.9e-85 320.1 309 51.8
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.1e-79 300.1 274 52.2
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 5.0e-77 292.7 256 58.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.3e-65 253.4 183 65.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 9.7e-65 251.9 397 37.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 2.5e-60 237.3 350 39.1
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 4.0e-58 229.9 360 38.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 7.0e-55 219.2 404 33.9
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-49 201.4 280 42.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.8e-47 194.5 197 54.8
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.8e-47 194.5 292 40.4
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.9e-40 169.9 367 34.3
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 4.6e-38 163.3 393 30.3
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 4.4e-33 146.7 174 44.3
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.3e-29 134.4 116 57.8
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 5.6e-28 129.8 113 60.2
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.2e-27 128.6 113 59.3
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 2.1e-11 74.7 113 46.9
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.4e-10 72.0 58 56.9
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.9e-09 65.9 62 48.4
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 3.8e-08 63.9 55 61.8
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.4e-07 62.0 47 59.6
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 9.3e-07 59.3 48 54.2
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.8e-06 56.2 47 48.9


User provided reference genes

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