Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.5e-184 647.1 437 100.0
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.5e-184 647.1 437 100.0
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.5e-184 647.1 437 100.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.5e-160 570.1 443 84.0
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.6e-159 566.6 443 83.3
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.4e-152 541.2 442 81.7
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.1e-134 482.3 674 52.7
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.8e-108 396.0 415 72.0
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.5e-69 266.5 430 50.2
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 4.6e-61 239.6 218 64.7
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.7e-55 221.1 236 54.2
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 6.4e-55 219.2 260 50.4
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.0e-52 210.3 224 54.5
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.0e-52 210.3 221 53.4
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.1e-52 209.5 262 50.4
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.1e-52 209.5 221 53.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 6.6e-52 209.1 260 51.9
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.1e-49 200.3 221 52.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.4e-48 196.4 267 45.7
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.6e-48 195.7 267 45.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.3e-47 194.9 221 52.9
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 8.4e-47 192.2 244 46.7
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.9e-46 191.0 241 44.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-46 190.7 239 48.1
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-46 190.7 240 48.3
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.4e-46 190.7 240 48.3
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 4.2e-46 189.9 251 48.2
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.2e-45 188.3 232 50.9
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.1e-45 187.6 228 50.4
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 6.0e-45 186.0 274 45.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.0e-44 183.7 256 45.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.5e-43 181.4 257 45.9
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.5e-43 181.4 245 43.7
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 4.3e-43 179.9 277 46.2
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.6e-43 178.7 245 45.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.6e-42 177.9 222 48.2
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.8e-42 176.4 215 52.6
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 6.2e-42 176.0 224 48.7
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.8e-41 174.5 229 49.3
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.8e-41 174.5 232 47.8
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.4e-41 174.1 258 41.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 5.3e-41 172.9 251 43.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.2e-40 171.8 250 44.0
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.5e-40 171.4 251 47.4
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 3.4e-40 170.2 194 57.2
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 5.8e-40 169.5 268 44.4
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.6e-40 169.1 251 44.6
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.2e-39 167.5 232 47.0
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 2.9e-39 167.2 186 51.6
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.9e-39 167.2 192 52.1
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 4.9e-39 166.4 255 43.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.9e-39 166.4 263 44.5
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 4.9e-39 166.4 140 63.6
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 6.4e-39 166.0 193 51.3
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.1e-38 165.2 238 45.4
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.1e-38 165.2 211 47.4
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.4e-38 164.9 238 44.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.4e-38 164.9 266 43.2
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 3.2e-38 163.7 266 42.9
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.2e-38 163.7 211 48.3
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 5.5e-38 162.9 270 42.2
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 5.5e-38 162.9 226 45.6
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 7.1e-38 162.5 266 42.5
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 9.3e-38 162.2 267 41.6
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 9.3e-38 162.2 255 39.2
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 9.3e-38 162.2 209 48.8
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 9.3e-38 162.2 217 47.0
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.2e-37 161.8 200 46.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.6e-37 161.4 209 47.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.7e-37 160.6 238 45.4
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.5e-37 160.2 184 47.8
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 4.6e-37 159.8 244 41.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 4.6e-37 159.8 240 42.9
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 6.0e-37 159.5 273 41.4
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 7.9e-37 159.1 225 46.7
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.9e-36 156.8 267 39.3
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.9e-36 156.8 184 50.0
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.7e-36 156.0 252 45.6
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 8.7e-36 155.6 268 42.2
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 8.7e-36 155.6 232 45.3
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.9e-35 154.5 257 39.3
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.5e-35 154.1 142 55.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 5.6e-35 152.9 216 46.8
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 7.4e-35 152.5 247 41.3
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.3e-34 151.8 164 54.3
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.8e-34 149.8 257 41.6
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 4.0e-33 146.7 254 41.3
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.5e-32 144.8 254 42.9
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.5e-32 144.8 252 42.9
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 7.6e-32 142.5 266 39.1
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 7.6e-32 142.5 248 39.5
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.0e-31 142.1 195 46.7
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.5e-30 137.5 153 49.7
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.2e-30 137.1 281 33.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 5.5e-30 136.3 275 37.8
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.6e-29 133.3 223 40.4
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.0e-28 132.1 150 48.0
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 6.7e-28 129.4 246 35.0
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.1e-27 128.6 231 38.1
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 3.3e-27 127.1 254 40.6
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 3.3e-27 127.1 264 32.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.6e-26 124.8 193 44.6
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.8e-26 123.2 130 52.3
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 8.2e-26 122.5 231 35.1
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.4e-25 120.9 268 34.7
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 5.9e-24 116.3 253 32.8
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 5.9e-24 116.3 262 31.3
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.0e-23 115.5 254 29.9
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.3e-23 115.2 394 27.9
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 8.4e-23 112.5 234 34.6
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 2.5e-22 110.9 218 35.8
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 7.2e-22 109.4 209 31.6
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 7.2e-22 109.4 204 39.7
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.2e-21 108.6 229 38.4
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.6e-21 106.7 219 33.8
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 7.9e-21 105.9 243 34.2
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-20 105.5 182 41.2
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.8e-20 104.8 222 37.4
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.8e-20 104.8 243 35.8
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.3e-20 104.4 182 41.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 8.7e-20 102.4 229 32.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.5e-19 101.7 234 32.5
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.9e-19 101.3 237 33.8
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 2.5e-19 100.9 200 35.0
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 4.3e-19 100.1 222 34.2
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 7.4e-19 99.4 215 35.8
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.4e-19 99.4 203 36.9
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 2.2e-18 97.8 203 36.9
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 3.7e-18 97.1 116 46.6
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.4e-17 94.4 181 38.1
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 9.0e-17 92.4 180 39.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 9.0e-17 92.4 198 34.8
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-16 92.0 241 30.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.6e-16 90.9 167 34.7
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 2.6e-16 90.9 238 30.3
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.0e-15 89.0 224 33.5
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.3e-15 88.6 263 30.4
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.9e-15 87.4 224 29.9
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 3.8e-15 87.0 228 30.3
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 5.0e-15 86.7 267 29.6
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 1.1e-14 85.5 231 30.7
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 3.2e-14 84.0 257 26.5
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.6e-13 81.6 227 29.5
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.1e-13 81.3 255 31.8
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 2.7e-13 80.9 227 29.5
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 7.9e-13 79.3 178 32.0
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 7.9e-13 79.3 241 27.8
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.3e-12 77.8 222 28.8
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 2.3e-12 77.8 252 27.4
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 3.0e-12 77.4 271 30.3
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 3.0e-12 77.4 249 26.5
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 3.0e-12 77.4 258 28.7
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 5.1e-12 76.6 204 34.3
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 5.1e-12 76.6 245 29.4
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 6.7e-12 76.3 258 27.1
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.1e-11 75.5 101 48.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.1e-11 75.5 241 26.6
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.5e-11 75.1 246 28.9
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 2.0e-11 74.7 256 25.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 2.5e-11 74.3 249 26.1
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.3e-11 73.9 220 30.9
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 5.7e-11 73.2 273 25.3
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 9.7e-11 72.4 250 29.2
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 4.8e-10 70.1 270 29.6
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.1e-09 68.9 223 29.1
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 3.1e-09 67.4 98 36.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 5.3e-09 66.6 223 26.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 5.9e-08 63.2 229 30.1
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 1.7e-07 61.6 290 25.9
C01p29000 Brassica napus HOM05D003589 ORTHO05D005170 3.2e-06 57.4 121 40.5
BolC1t02831H Brassica oleracea HOM05D003589 ORTHO05D005170 3.2e-06 57.4 121 40.5


User provided reference genes

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