Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0151 Fragaria x ananassa HOM05D000278 ORTHO05D020208 2.3e-35 151.8 81 100.0
FAN02G0492 Fragaria x ananassa HOM05D000278 ORTHO05D005754 3.0e-22 108.2 60 93.3
FvH4_6g48350 Fragaria vesca HOM05D000278 ORTHO05D005754 8.6e-22 106.7 74 79.7
FAN01G0075 Fragaria x ananassa HOM05D000278 ORTHO05D005754 4.0e-19 97.8 60 90.0
FAN10G3787 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.2e-17 92.0 60 85.0
FvH4_7g06380 Fragaria vesca HOM05D000278 ORTHO05D005754 2.9e-17 91.7 57 89.5
FAN03G2674 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.9e-17 91.7 57 89.5
FAN06G1697 Fragaria x ananassa HOM05D000278 ORTHO05D005754 1.1e-16 89.7 57 87.7
RcHm_v2.0_Chr1g0334481 Rosa chinensis HOM05D000278 ORTHO05D005754 1.9e-16 89.0 61 83.6
Gohir.A09G174700 Gossypium hirsutum HOM05D000278 ORTHO05D005754 4.1e-16 87.8 60 80.0
Gohir.A11G006100 Gossypium hirsutum HOM05D000278 ORTHO05D005754 4.1e-16 87.8 60 80.0
Gohir.D11G005200 Gossypium hirsutum HOM05D000278 ORTHO05D005754 4.1e-16 87.8 60 80.0
Gorai.007G006400 Gossypium raimondii HOM05D000278 ORTHO05D005754 4.1e-16 87.8 60 80.0
Duzib205G1185 Durio zibethinus HOM05D000278 ORTHO05D005754 5.4e-16 87.4 60 80.0
Thecc.03G045100 Theobroma cacao HOM05D000278 ORTHO05D005754 7.0e-16 87.0 60 80.0
ClCG04G010810 Citrullus lanatus HOM05D000278 ORTHO05D005754 1.2e-15 86.3 60 75.0
CsaV3_1G006990 Cucumis sativus L. HOM05D000278 ORTHO05D005754 1.2e-15 86.3 60 76.7
Duzib068G1026 Durio zibethinus HOM05D000278 ORTHO05D005754 1.6e-15 85.9 60 78.3
COL.COLO4_04278 Corchorus olitorius HOM05D000278 ORTHO05D005754 2.0e-15 85.5 60 78.3
COL.COLO4_23991 Corchorus olitorius HOM05D000278 ORTHO05D005754 2.0e-15 85.5 60 78.3
Gohir.D09G171700 Gossypium hirsutum HOM05D000278 ORTHO05D005754 2.0e-15 85.5 60 78.3
Gorai.006G193500 Gossypium raimondii HOM05D000278 ORTHO05D005754 2.0e-15 85.5 60 78.3
Sed0001845 Sechium edule HOM05D000278 ORTHO05D005754 2.0e-15 85.5 60 76.7
Ciclev10007963m.g Citrus clementina HOM05D000278 ORTHO05D005754 3.5e-15 84.7 56 80.4
MD06G1222400 Malus domestica HOM05D000278 ORTHO05D005754 4.6e-15 84.3 56 82.1
MD14G1231500 Malus domestica HOM05D000278 ORTHO05D005754 6.0e-15 84.0 56 80.4
Manes.04G059400 Manihot esculenta HOM05D000278 ORTHO05D005754 7.8e-15 83.6 60 75.0
MELO3C002117.2 Cucumis melo HOM05D000278 ORTHO05D005754 1.3e-14 82.8 60 73.3
Sed0025276 Sechium edule HOM05D000278 ORTHO05D005754 1.3e-14 82.8 60 73.3
HanXRQChr13g0387831 Helianthus annuus HOM05D000278 ORTHO05D005754 1.7e-14 82.4 60 73.3
Lsat_1_v5_gn_5_156500 Lactuca sativa HOM05D000278 ORTHO05D005754 1.7e-14 82.4 60 73.3
PSO541G5062 Papaver somniferum HOM05D000278 ORTHO05D005754 1.7e-14 82.4 47 85.1
PSO675G0205 Papaver somniferum HOM05D000278 ORTHO05D005754 1.7e-14 82.4 47 85.1
Manes.09G152200 Manihot esculenta HOM05D000278 ORTHO05D005754 3.0e-14 81.6 60 73.3
Psat0s2458g0160 Pisum sativum HOM05D000278 ORTHO05D005754 3.0e-14 81.6 52 78.8
Prupe.5G227000 Prunus persica HOM05D000278 ORTHO05D005754 3.9e-14 81.3 57 80.7
PGR044G2034 Punica granatum HOM05D000278 ORTHO05D005754 3.9e-14 81.3 50 86.0
CSS0031079 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005754 6.6e-14 80.5 62 72.6
TWI15G0649 Tripterygium wilfordii HOM05D000278 ORTHO05D005754 8.6e-14 80.1 56 76.8
TWI60G1222 Tripterygium wilfordii HOM05D000278 ORTHO05D005754 8.6e-14 80.1 56 76.8
TAR622G1096 Trochodendron aralioides HOM05D000278 ORTHO05D005754 8.6e-14 80.1 60 73.3
Atru.chr9.933 Acer truncatum HOM05D000278 ORTHO05D005754 1.1e-13 79.7 62 72.6
C05p47840 Brassica napus HOM05D000278 ORTHO05D005754 1.1e-13 79.7 60 71.7
BolC5t33498H Brassica oleracea HOM05D000278 ORTHO05D005754 1.1e-13 79.7 60 71.7
Dinv13559 Davidia involucrata HOM05D000278 ORTHO05D005754 1.1e-13 79.7 62 72.6
Hma1.2p1_1257F.1_g270720 Hydrangea macrophylla HOM05D000278 ORTHO05D005754 1.1e-13 79.7 62 72.6
Lj4g0009644 Lotus japonicus HOM05D000278 ORTHO05D005754 1.1e-13 79.7 56 76.8
Potri.015G042600 Populus trichocarpa HOM05D000278 ORTHO05D005754 1.1e-13 79.7 60 73.3
Ca_15620_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005754 1.5e-13 79.3 60 73.3
Eucgr.K02244 Eucalyptus grandis HOM05D000278 ORTHO05D005754 1.5e-13 79.3 53 81.1
Lj4g0001788 Lotus japonicus HOM05D000278 ORTHO05D005754 1.5e-13 79.3 56 75.0
Potri.012G051300 Populus trichocarpa HOM05D000278 ORTHO05D005754 1.5e-13 79.3 54 79.6
vmacro16429 Vaccinium macrocarpon HOM05D000278 ORTHO05D005754 1.5e-13 79.3 61 73.8
Actinidia17123 Actinidia chinensis HOM05D000278 ORTHO05D005754 1.9e-13 79.0 62 74.2
CANSAT80G0850 Cannabis sativa HOM05D000278 ORTHO05D005754 1.9e-13 79.0 63 76.2
Lalb_Chr24g0397981 Lupinus albus HOM05D000278 ORTHO05D005754 1.9e-13 79.0 60 70.0
Nn3g17995 Nelumbo nucifera HOM05D000278 ORTHO05D005754 1.9e-13 79.0 62 72.6
Sabra15G0042700 Salix brachista HOM05D000278 ORTHO05D005754 1.9e-13 79.0 60 73.3
Sabra15G0044000 Salix brachista HOM05D000278 ORTHO05D005754 1.9e-13 79.0 60 73.3
Cpa.g.sc999.3 Carica papaya HOM05D000278 ORTHO05D005754 2.5e-13 78.6 59 72.9
BcaC05g28655 Brassica carinata HOM05D000278 ORTHO05D005754 3.3e-13 78.2 60 70.0
A05p31540 Brassica napus HOM05D000278 ORTHO05D005754 3.3e-13 78.2 60 70.0
BraA05t21989Z Brassica rapa HOM05D000278 ORTHO05D005754 3.3e-13 78.2 60 70.0
Cfa019715 Carpinus fangiana HOM05D000278 ORTHO05D005754 3.3e-13 78.2 61 72.1
Nn4g24016 Nelumbo nucifera HOM05D000278 ORTHO05D005754 3.3e-13 78.2 62 72.6
TAR374G0990 Trochodendron aralioides HOM05D000278 ORTHO05D005754 3.3e-13 78.2 61 72.1
VMungo0251G3005 Vigna mungo HOM05D000278 ORTHO05D005754 3.3e-13 78.2 60 71.7
Ca_17227_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005754 4.3e-13 77.8 51 80.4
Dinv10409 Davidia involucrata HOM05D000278 ORTHO05D005754 4.3e-13 77.8 62 71.0
Lalb_Chr14g0370831 Lupinus albus HOM05D000278 ORTHO05D005754 4.3e-13 77.8 60 68.3
QL10p027147 Quercus lobata HOM05D000278 ORTHO05D005754 4.3e-13 77.8 57 73.7
Rhsim12G0140600 Rhododendron simsii HOM05D000278 ORTHO05D005754 4.3e-13 77.8 55 76.4
Aa31LG8G5030 Aethionema arabicum HOM05D000278 ORTHO05D005754 5.6e-13 77.4 60 70.0
Glyma.05G242700 Glycine max HOM05D000278 ORTHO05D005754 5.6e-13 77.4 60 70.0
Glyma.08G050100 Glycine max HOM05D000278 ORTHO05D005754 5.6e-13 77.4 60 70.0
Lj1A152G45 Lonicera japonica HOM05D000278 ORTHO05D005754 5.6e-13 77.4 56 75.0
Lj9A423T66 Lonicera japonica HOM05D000278 ORTHO05D005754 5.6e-13 77.4 56 75.0
BcaB04g20787 Brassica carinata HOM05D000278 ORTHO05D005754 7.3e-13 77.0 59 69.5
C01p45950 Brassica napus HOM05D000278 ORTHO05D005754 7.3e-13 77.0 59 69.5
Medtr3g109925 Medicago truncatula HOM05D000278 ORTHO05D005754 7.3e-13 77.0 60 73.3
Sp3g16300 Schrenkiella parvula HOM05D000278 ORTHO05D005754 7.3e-13 77.0 60 70.0
BcaC09g48776 Brassica carinata HOM05D000278 ORTHO05D005754 9.5e-13 76.6 59 69.5
BolC1t04565H Brassica oleracea HOM05D000278 ORTHO05D005754 9.5e-13 76.6 59 69.5
Glyma.07G149200 Glycine max HOM05D000278 ORTHO05D005754 9.5e-13 76.6 60 70.0
HanXRQChr01g0008541 Helianthus annuus HOM05D000278 ORTHO05D005754 9.5e-13 76.6 62 72.6
Phvul.002G326300 Phaseolus vulgaris HOM05D000278 ORTHO05D005754 9.5e-13 76.6 60 70.0
CiPaw.16G089700 Carya illinoinensis HOM05D000278 ORTHO05D005754 1.2e-12 76.3 62 67.7
Psat7g005560 Pisum sativum HOM05D000278 ORTHO05D005754 1.2e-12 76.3 57 73.7
Aqoxy3G00177 Aquilegia oxysepala HOM05D000278 ORTHO05D005754 1.6e-12 75.9 60 71.7
CSS0023726 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005754 1.6e-12 75.9 55 74.5
DCAR_013755 Daucus carota HOM05D000278 ORTHO05D005754 2.1e-12 75.5 60 70.0
A01p36150 Brassica napus HOM05D000278 ORTHO05D005754 2.8e-12 75.1 55 72.7
BraA01t03693Z Brassica rapa HOM05D000278 ORTHO05D005754 2.8e-12 75.1 55 72.7
CARHR093520 Cardamine hirsuta HOM05D000278 ORTHO05D005754 2.8e-12 75.1 60 66.7
SHI19047 Sapria himalayana HOM05D000278 ORTHO05D005754 2.8e-12 75.1 50 78.0
THA.LOC104820373 Tarenaya hassleriana HOM05D000278 ORTHO05D005754 2.8e-12 75.1 60 71.7
Thhalv10020479m.g Eutrema salsugineum HOM05D000278 ORTHO05D005754 3.6e-12 74.7 56 71.4
MBI06_g36483_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D005754 3.6e-12 74.7 60 68.3
Cc04_g06750 Coffea canephora HOM05D000278 ORTHO05D005754 4.7e-12 74.3 58 70.7
DCAR_023227 Daucus carota HOM05D000278 ORTHO05D005754 8.1e-12 73.6 49 79.6
ECA236G0654 Erigeron canadensis HOM05D000278 ORTHO05D005754 8.1e-12 73.6 62 69.4
TPR.G12811 Trifolium pratense HOM05D000278 ORTHO05D005754 8.1e-12 73.6 43 81.4
AL3G31380 Arabidopsis lyrata HOM05D000278 ORTHO05D005754 1.1e-11 73.2 60 65.0
AT3G18190 Arabidopsis thaliana HOM05D000278 ORTHO05D005754 1.1e-11 73.2 60 65.0
Carub.0003s1794 Capsella rubella HOM05D000278 ORTHO05D005754 1.1e-11 73.2 60 65.0
ATR0582G154 Amborella trichopoda HOM05D000278 ORTHO05D005754 2.3e-11 72.0 60 68.3
Peaxi162Scf00683g00032 Petunia axillaris HOM05D000278 ORTHO05D005754 2.3e-11 72.0 64 67.2
SMO358G0276 Selaginella moellendorffii HOM05D000278 ORTHO05D005754 2.3e-11 72.0 50 72.0
MSTRG.9277 Avicennia marina HOM05D000278 ORTHO05D005754 3.1e-11 71.6 60 63.3
CDE07G1658 Ceratophyllum demersum HOM05D000278 ORTHO05D005754 3.1e-11 71.6 61 67.2
Solyc03g118910.1 Solanum lycopersicum HOM05D000278 ORTHO05D005754 4.0e-11 71.2 60 66.7
Sopen03g037850 Solanum pennellii HOM05D000278 ORTHO05D005754 4.0e-11 71.2 60 66.7
Nitab4.5_0001456g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005754 6.8e-11 70.5 64 65.6
Nitab4.5_0005692g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005754 6.8e-11 70.5 64 65.6
PGSC0003DMG400005665 Solanum tuberosum HOM05D000278 ORTHO05D005754 8.9e-11 70.1 54 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3125 Anthoceros agrestis HOM05D000278 ORTHO05D005754 1.2e-10 69.7 56 62.5
Zm00001eb189870 Zea mays HOM05D000278 ORTHO05D005754 2.0e-10 68.9 52 67.3
EL10Ac5g11495 Beta vulgaris HOM05D000278 ORTHO05D005754 2.6e-10 68.6 59 62.7
Zm00001eb001240 Zea mays HOM05D000278 ORTHO05D005754 2.6e-10 68.6 52 67.3
Pp3c19_7680 Physcomitrium patens HOM05D000278 ORTHO05D005754 4.4e-10 67.8 55 65.5
Rhsim10G0186300 Rhododendron simsii HOM05D000278 ORTHO05D020208 4.4e-10 67.8 62 69.4
Ah.13g074580 Amaranthus hybridus HOM05D000278 ORTHO05D005754 7.5e-10 67.0 59 59.3
AUR62033769 Chenopodium quinoa HOM05D000278 ORTHO05D005754 7.5e-10 67.0 61 62.3
Oeu033474.1 Olea europaea HOM05D000278 ORTHO05D005754 7.5e-10 67.0 55 60.0
Os02g0332200 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005754 7.5e-10 67.0 53 66.0
Mapoly0047s0069 Marchantia polymorpha HOM05D000278 ORTHO05D005754 9.9e-10 66.6 48 68.8
Sc12g0007460 Simmondsia chinensis HOM05D000278 ORTHO05D005754 9.9e-10 66.6 81 51.9
SGA_v2.0_scaffold168G38485 Striga asiatica HOM05D000278 ORTHO05D005754 9.9e-10 66.6 57 64.9
Migut.D01595 Erythranthe guttata HOM05D000278 ORTHO05D005754 1.3e-09 66.2 56 60.7
Aqoxy3G00176 Aquilegia oxysepala HOM05D000278 ORTHO05D005754 1.7e-09 65.9 52 57.7
unitig_0.g804 Utricularia gibba HOM05D000278 ORTHO05D005754 2.2e-09 65.5 51 64.7
Pp3c22_2530 Physcomitrium patens HOM05D000278 ORTHO05D005754 3.7e-09 64.7 49 65.3
AUR62029935 Chenopodium quinoa HOM05D000278 ORTHO05D005754 1.4e-08 62.8 59 57.6
Duzib213G0907 Durio zibethinus HOM05D000278 ORTHO05D020208 1.9e-08 62.4 52 63.5
PRCOL_00000987 Prasinoderma coloniale HOM05D000278 ORTHO05D005754 4.1e-08 61.2 45 60.0
MD13G1132400 Malus domestica HOM05D000278 ORTHO05D020208 5.4e-08 60.8 69 47.8
Os10g0514600 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005754 5.4e-08 60.8 61 59.0
CBR_g49606 Chara braunii HOM05D000278 ORTHO05D005754 2.7e-07 58.5 41 68.3
Cre05.g234639 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D005754 5.1e-06 54.3 44 59.1


User provided reference genes

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