Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 7.7e-155 550.4 276 100.0
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.3e-151 538.9 276 97.8
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.7e-150 533.5 277 97.5
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 8.2e-149 530.4 277 97.1
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 2.4e-140 502.3 280 91.8
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.1e-140 501.5 274 93.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 2.5e-105 386.0 296 70.6
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 3.6e-104 382.1 289 71.3
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 8.0e-104 380.9 290 71.4
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.7e-99 365.9 285 68.1
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 4.6e-99 365.2 283 68.2
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 6.0e-99 364.8 285 69.1
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.5e-97 359.4 268 69.8
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.4e-95 353.6 283 67.8
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 8.9e-95 350.9 280 66.8
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.2e-94 350.5 267 69.7
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 1.5e-94 350.1 274 68.2
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 2.6e-94 349.4 265 70.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 3.4e-94 349.0 294 66.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 4.4e-94 348.6 214 81.8
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 4.4e-94 348.6 217 80.2
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 9.9e-94 347.4 208 83.2
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 2.9e-93 345.9 250 72.0
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.9e-93 345.9 215 80.5
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.7e-93 345.5 250 71.6
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 3.7e-93 345.5 273 68.5
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 4.9e-93 345.1 278 66.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 8.3e-93 344.4 275 67.6
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.4e-92 343.6 214 79.4
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.9e-92 343.2 273 67.8
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 2.4e-92 342.8 235 75.3
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 2.4e-92 342.8 270 66.7
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 7.1e-92 341.3 280 66.4
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.2e-91 340.5 214 79.4
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.6e-91 340.1 208 80.8
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.6e-91 340.1 214 77.1
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 2.1e-91 339.7 210 79.5
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.7e-91 339.3 297 64.3
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.7e-91 339.3 270 67.4
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.5e-91 339.0 213 80.8
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 4.6e-91 338.6 275 67.3
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.3e-90 337.0 276 67.0
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.7e-90 336.7 216 78.7
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.7e-90 336.7 286 64.0
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 6.6e-90 334.7 283 64.0
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.1e-89 334.0 214 78.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.1e-89 334.0 283 64.0
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.5e-89 333.6 208 80.3
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.9e-89 333.2 211 79.1
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.9e-89 333.2 208 79.8
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 4.3e-89 332.0 198 80.3
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.3e-89 332.0 273 66.3
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 5.6e-89 331.6 218 75.7
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 5.6e-89 331.6 211 77.3
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 7.3e-89 331.3 207 78.7
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 7.3e-89 331.3 224 73.7
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.2e-88 330.5 297 61.3
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.6e-88 330.1 243 70.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 2.1e-88 329.7 274 64.2
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.1e-88 329.7 273 66.7
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 2.1e-88 329.7 217 77.9
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.8e-88 329.3 211 78.7
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.8e-88 329.3 211 78.7
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.6e-88 328.9 283 64.0
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 4.7e-88 328.6 214 76.2
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 6.2e-88 328.2 212 77.8
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 6.2e-88 328.2 212 77.8
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.1e-87 327.4 211 78.7
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 6.8e-87 324.7 239 69.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 6.8e-87 324.7 279 63.4
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.5e-86 323.6 250 68.0
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.0e-86 323.2 275 64.7
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.0e-86 323.2 275 64.7
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 4.4e-86 322.0 276 60.9
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 4.4e-86 322.0 200 78.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 5.8e-86 321.6 198 79.8
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 9.9e-86 320.9 223 70.4
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.3e-85 320.5 261 64.4
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 2.2e-85 319.7 279 63.1
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.9e-85 319.3 250 68.4
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 3.2e-84 315.8 183 80.9
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 7.1e-84 314.7 183 80.3
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 4.6e-83 312.0 246 68.7
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.7e-82 310.1 311 60.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.2e-80 303.9 199 74.9
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.2e-80 303.9 208 71.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.8e-79 300.1 173 83.8
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.8e-79 300.1 175 86.3
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-78 297.0 211 73.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 2.9e-77 292.7 203 70.9
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 4.9e-77 292.0 199 74.9
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 6.4e-77 291.6 342 52.3
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 8.4e-77 291.2 218 69.3
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 3.2e-76 289.3 217 65.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.3e-74 283.1 191 71.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 7.3e-73 278.1 251 62.9
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.3e-72 277.3 199 69.8
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.6e-72 276.9 188 71.8
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 4.0e-71 272.3 194 71.6
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 4.2e-68 262.3 212 60.4
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 3.5e-67 259.2 214 66.4
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 2.3e-66 256.5 198 66.7
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 9.6e-65 251.1 295 52.5
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.0e-62 243.4 151 81.5
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.0e-53 214.5 276 49.6
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 4.2e-52 209.1 258 48.4
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.0e-50 204.5 121 80.2
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 7.4e-49 198.4 110 86.4
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 2.4e-47 193.4 210 48.1
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.8e-45 186.0 220 45.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.4e-44 184.1 217 51.2
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.0e-41 173.7 120 74.2
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 9.7e-41 171.4 211 46.4
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 2.8e-40 169.9 179 59.8
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 2.0e-38 163.7 97 81.4
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 1.3e-37 161.0 97 80.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.2e-35 154.5 179 52.5
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 6.3e-32 142.1 271 38.4
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 1.2e-30 137.9 76 85.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 5.9e-30 135.6 173 48.0
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.3e-29 134.4 80 78.8
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.7e-27 126.7 78 78.2
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.7e-27 126.7 77 80.5
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 1.5e-17 94.4 58 72.4
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 4.4e-17 92.8 61 75.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 9.7e-17 91.7 52 80.8
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.7e-16 89.7 133 49.6
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 3.1e-15 86.7 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.1e-15 86.3 51 78.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 9.4e-12 75.1 55 67.3
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.2e-11 74.7 48 70.8
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 6.8e-10 68.9 47 68.1
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.8e-08 63.5 47 66.0


User provided reference genes

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