Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.8e-118 427.9 230 100.0
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.6e-100 369.0 206 95.1
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 4.7e-97 358.2 201 96.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-91 339.3 201 90.5
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.0e-75 287.3 201 76.6
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.3e-72 276.2 201 74.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.7e-70 270.0 201 73.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.5e-68 261.9 201 70.6
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.5e-66 256.9 201 69.7
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 4.2e-66 255.4 143 93.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 5.5e-66 255.0 201 69.7
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.0e-64 249.2 201 69.2
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 4.0e-64 248.8 202 67.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.0e-63 246.5 201 67.2
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.0e-63 246.5 201 67.2
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 2.6e-63 246.1 200 66.5
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 4.4e-63 245.4 202 68.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.3e-62 243.8 208 63.9
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.8e-62 242.7 201 65.2
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 6.3e-62 241.5 203 65.5
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 6.3e-62 241.5 201 65.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.4e-61 240.4 201 68.2
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.2e-60 237.3 203 64.5
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 2.0e-60 236.5 208 62.5
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.0e-59 234.2 203 64.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.3e-59 233.8 202 65.8
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.3e-59 233.8 203 62.6
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.3e-59 233.8 201 65.2
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.5e-58 229.6 201 62.2
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 4.3e-58 228.8 201 63.7
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 5.6e-58 228.4 205 64.4
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.6e-57 226.9 201 66.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.6e-57 226.9 202 61.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 2.1e-57 226.5 202 60.4
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 6.1e-57 224.9 202 61.9
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.4e-56 223.8 201 62.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.8e-56 223.4 201 62.7
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 3.1e-56 222.6 202 62.9
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.2e-56 221.9 205 62.4
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 6.8e-56 221.5 208 61.1
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 8.9e-56 221.1 201 62.7
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.2e-55 220.7 201 62.2
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.2e-55 220.7 201 62.2
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.4e-55 219.2 205 63.9
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 5.8e-55 218.4 202 62.9
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 7.5e-55 218.0 203 63.1
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 7.5e-55 218.0 178 71.3
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.3e-54 217.2 201 61.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.3e-54 217.2 201 61.7
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.2e-54 216.5 204 63.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 4.9e-54 215.3 203 62.1
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.9e-54 215.3 201 62.2
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.1e-53 214.2 201 62.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.9e-53 213.4 201 60.7
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.4e-53 213.0 202 60.9
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.4e-53 213.0 214 59.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 5.4e-53 211.8 202 61.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 5.4e-53 211.8 203 58.6
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.0e-53 211.5 201 60.2
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 7.0e-53 211.5 211 60.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.6e-52 210.3 201 60.2
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.6e-52 210.3 207 60.4
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.6e-52 210.3 201 59.7
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.6e-52 210.3 205 62.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-52 209.9 202 57.9
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-52 209.9 202 57.9
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.7e-52 209.5 208 59.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.5e-52 209.1 205 57.1
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 4.6e-52 208.8 201 60.2
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 6.0e-52 208.4 201 60.2
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 6.0e-52 208.4 201 60.2
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.8e-52 208.0 201 61.2
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.8e-52 208.0 201 61.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.8e-52 208.0 208 60.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.0e-51 207.6 201 60.7
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.7e-51 206.8 201 61.7
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.7e-51 206.8 205 62.0
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.1e-50 204.1 210 54.8
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.1e-50 204.1 201 60.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.5e-50 203.8 201 60.2
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.9e-50 203.4 201 60.2
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.9e-50 203.4 217 56.2
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.3e-50 202.2 201 59.2
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 5.6e-50 201.8 201 58.7
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.7e-49 198.7 203 56.7
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 8.0e-49 198.0 201 58.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-48 197.6 201 58.7
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 2.3e-48 196.4 201 59.2
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 2.3e-48 196.4 201 59.2
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.3e-48 196.4 205 57.6
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.1e-48 196.1 201 57.7
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.1e-48 196.1 201 57.7
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.5e-47 193.7 223 53.8
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.3e-46 190.7 209 56.0
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.2e-46 189.9 201 57.2
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 5.4e-45 185.3 271 44.3
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.4e-45 185.3 205 52.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 4.6e-44 182.2 215 55.3
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.0e-43 181.0 145 66.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.3e-43 180.6 203 53.2
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.7e-43 180.3 208 53.4
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-42 177.6 179 58.7
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.2e-36 157.5 135 65.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 8.6e-35 151.4 115 71.3
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.5e-34 149.8 203 48.8
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 8.9e-32 141.4 96 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 7.3e-26 121.7 204 41.7
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.8e-25 119.0 152 46.1
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.4e-24 117.5 203 42.9
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.2e-22 110.2 161 41.6
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 6.4e-22 108.6 156 46.8
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.9e-21 107.1 216 38.9
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.7e-19 100.5 94 58.5
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 9.6e-18 94.7 204 38.2
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 8.1e-17 91.7 171 42.7
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.4e-14 82.0 97 47.4
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.9e-13 80.5 67 70.1
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.1e-12 77.0 104 46.2
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 4.3e-10 69.3 49 77.6
RcHm_v2.0_Chr2g0163681 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-09 67.4 64 64.1
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.2e-09 65.5 69 52.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.4e-08 63.5 74 45.9
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 4.0e-08 62.8 116 42.2
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.5e-07 60.8 58 65.5
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 2.0e-07 60.5 46 67.4
FAN12G1388 Fragaria x ananassa HOM05D063885 ORTHO05D046237 5.8e-07 58.9 101 44.6
MD11G1231800 Malus domestica HOM05D005714 ORTHO05D006812 8.4e-06 55.1 47 63.8


User provided reference genes

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