Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.8e-72 274.6 130 100.0
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 3.8e-72 274.6 130 100.0
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-71 273.1 130 99.2
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-71 273.1 130 99.2
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-71 271.6 130 99.2
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 9.4e-71 270.0 130 96.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.7e-70 268.5 130 96.2
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 6.1e-70 267.3 126 100.0
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.4e-69 266.2 130 95.4
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 8.8e-69 263.5 126 97.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.0e-68 262.3 126 97.6
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 4.4e-68 261.2 126 96.0
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 5.7e-68 260.8 128 95.3
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 5.7e-68 260.8 126 96.0
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 7.5e-68 260.4 126 96.0
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.5e-68 260.4 130 93.8
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.3e-67 259.6 126 96.0
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.7e-67 259.2 126 96.0
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.7e-67 259.2 126 95.2
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.7e-67 259.2 130 93.1
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-67 259.2 130 93.1
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.7e-67 259.2 130 93.1
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.7e-67 259.2 126 95.2
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 95.2
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 95.2
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 95.2
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 95.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 95.2
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 3.7e-67 258.1 126 96.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.8e-67 257.7 126 94.4
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 4.8e-67 257.7 126 95.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.8e-67 257.7 130 92.3
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.8e-67 257.7 126 95.2
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.8e-67 257.7 126 95.2
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 8.3e-67 256.9 126 95.2
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 94.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.8e-66 255.8 124 96.0
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.8e-66 255.8 124 96.0
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 94.4
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 93.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 94.4
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 94.4
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 94.4
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 93.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 9.1e-66 253.4 126 92.9
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 9.1e-66 253.4 126 94.4
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 93.7
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 93.7
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.7e-65 251.9 126 92.1
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.7e-65 251.9 126 92.1
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.5e-65 251.5 126 92.9
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 3.5e-65 251.5 126 91.3
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 3.5e-65 251.5 126 91.3
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 90.5
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 4.5e-65 251.1 125 92.0
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 90.5
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 5.9e-65 250.8 126 89.7
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 7.7e-65 250.4 126 92.9
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.0e-64 250.0 127 90.6
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.0e-64 250.0 126 92.1
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.0e-64 250.0 122 94.3
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 91.3
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 91.3
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.8e-64 248.1 129 87.6
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 92.1
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 92.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 90.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 90.5
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 92.1
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 91.3
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 6.5e-64 247.3 126 91.3
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 6.5e-64 247.3 126 91.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 6.5e-64 247.3 126 91.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 8.5e-64 246.9 126 90.5
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 91.1
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-63 246.5 124 91.1
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.9e-63 245.7 126 91.3
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 2.5e-63 245.4 126 90.5
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.2e-63 244.6 124 90.3
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 5.5e-63 244.2 128 87.5
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 7.2e-63 243.8 124 91.9
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 7.2e-63 243.8 124 91.9
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 7.2e-63 243.8 124 91.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 9.4e-63 243.4 126 88.9
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.2e-62 243.0 129 87.6
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.2e-62 243.0 126 88.1
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 87.3
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 1.6e-62 242.7 128 90.6
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 89.7
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 90.3
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 2.7e-62 241.9 128 85.9
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 4.7e-62 241.1 124 90.3
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 4.7e-62 241.1 124 90.3
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 8.0e-62 240.4 124 90.3
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 1.0e-61 240.0 151 78.1
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 90.3
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 1.8e-61 239.2 124 87.9
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 4.0e-61 238.0 128 89.1
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 5.2e-61 237.7 126 87.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 5.2e-61 237.7 126 87.3
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.8e-61 237.3 157 75.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 8.8e-61 236.9 112 96.4
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-60 236.1 123 89.4
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.0e-60 235.7 130 85.4
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 2.6e-60 235.3 124 88.7
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 3.4e-60 235.0 124 88.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 5.7e-60 234.2 121 90.1
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 5.7e-60 234.2 125 84.8
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 9.8e-60 233.4 119 91.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 9.8e-60 233.4 119 91.6
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 6.3e-59 230.7 124 87.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.8e-58 229.2 171 66.7
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 2.0e-57 225.7 130 82.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.7e-57 225.3 120 86.7
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.3e-56 223.0 126 80.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-56 223.0 138 76.8
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.9e-56 221.9 126 79.4
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 1.5e-55 219.5 126 77.8
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.9e-55 219.2 124 84.7
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.6e-54 216.1 114 88.6
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.6e-54 216.1 109 91.7
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 2.1e-54 215.7 112 91.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.8e-54 215.3 114 87.7
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 8.0e-54 213.8 126 75.4
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.4e-52 208.0 108 90.7
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.2e-50 200.3 149 68.5
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 3.6e-46 188.3 124 75.8
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.8e-44 180.3 100 87.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 2.9e-43 178.7 111 76.6
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 4.1e-42 174.9 87 90.8
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 5.4e-42 174.5 86 93.0
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.0e-41 172.6 134 67.2
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 2.0e-41 172.6 82 95.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.0e-40 170.2 82 95.1
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 6.6e-40 167.5 82 93.9
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.6e-40 167.2 182 51.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.9e-39 166.0 82 92.7
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.3e-39 165.2 126 65.9
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 4.3e-39 164.9 82 90.2
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.6e-38 162.9 83 90.4
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 4.7e-38 161.4 77 94.8
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 2.3e-37 159.1 78 94.9
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 2.0e-36 156.0 110 70.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 4.9e-35 151.4 78 89.7
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 5.4e-34 147.9 78 88.5
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.0e-32 143.7 118 61.0
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 6.6e-32 141.0 120 59.2
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-30 136.7 73 84.9
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 1.2e-30 136.7 64 98.4
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 6.2e-30 134.4 75 84.0
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.1e-26 123.6 123 55.3
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.1e-26 123.6 123 55.3
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 2.1e-25 119.4 58 91.4
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 6.6e-24 114.4 58 91.4
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.8e-21 106.3 58 86.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.7e-16 89.7 44 95.5
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 3.6e-06 55.5 69 40.6


User provided reference genes

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