Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.7e-267 922.9 471 100.0
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.9e-232 807.4 495 86.3
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 4.9e-226 787.7 499 85.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.1e-225 784.6 499 85.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.6e-189 666.4 503 74.4
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.3e-167 593.6 427 75.9
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.3e-167 593.6 470 68.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 2.2e-165 586.3 475 67.2
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 7.7e-163 577.8 482 66.0
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 4.5e-155 552.0 448 65.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.7e-152 542.0 478 62.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.7e-149 533.5 468 60.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.2e-149 533.1 464 64.0
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 5.3e-148 528.5 466 63.5
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 9.1e-148 527.7 461 63.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.2e-147 527.3 476 61.8
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.2e-147 527.3 476 62.8
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.9e-147 525.0 481 60.9
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.7e-147 524.6 472 62.9
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.0e-146 524.2 469 63.1
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.2e-145 519.2 476 61.6
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 5.5e-145 518.5 472 61.9
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 5.5e-145 518.5 470 62.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.6e-144 515.8 467 61.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 2.3e-143 513.1 477 60.4
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.3e-143 513.1 471 62.6
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.0e-143 512.7 476 60.9
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.9e-143 512.3 463 60.5
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.5e-142 510.4 480 60.4
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.6e-142 509.6 488 59.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.3e-142 509.2 468 60.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 7.4e-142 508.1 469 59.3
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 2.8e-141 506.1 476 60.3
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 6.3e-141 505.0 472 59.5
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.1e-140 502.7 467 61.0
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 5.3e-140 501.9 482 58.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.0e-139 500.0 469 59.1
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.3e-138 497.3 487 59.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.5e-137 493.0 459 59.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.2e-137 492.7 465 59.1
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.7e-136 488.8 483 58.6
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 8.8e-135 484.6 469 58.4
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.2e-134 484.2 472 58.3
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.0e-134 483.4 467 58.7
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 7.5e-134 481.5 467 58.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 6.3e-133 478.4 501 56.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 8.2e-133 478.0 468 58.5
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.4e-132 476.5 469 58.6
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.1e-132 475.7 468 56.8
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 9.1e-132 474.6 482 57.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-131 474.2 474 56.8
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.6e-131 473.8 470 56.6
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.6e-131 473.8 470 56.6
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.0e-131 473.4 469 57.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.9e-131 471.9 467 56.7
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-130 470.7 468 56.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.1e-129 467.6 463 57.5
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 3.2e-129 466.1 464 55.8
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.2e-129 466.1 475 55.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 5.5e-129 465.3 469 57.6
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-128 463.4 470 55.5
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 6.8e-127 458.4 461 57.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.6e-126 456.4 434 59.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.4e-126 456.1 477 55.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 2.2e-125 453.4 514 51.4
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.2e-125 453.4 469 55.7
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.8e-124 450.3 451 57.9
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 7.0e-124 448.4 474 53.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 7.0e-124 448.4 471 55.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 7.0e-124 448.4 481 53.4
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.5e-123 445.7 460 56.3
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.8e-122 442.6 472 55.7
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 5.0e-122 442.2 464 57.3
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.1e-120 436.8 466 54.5
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.3e-119 433.3 461 53.8
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 8.9e-119 431.4 481 53.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 5.7e-118 428.7 451 55.7
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 9.8e-118 427.9 463 53.3
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 6.3e-117 425.2 483 51.3
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 3.5e-115 419.5 458 54.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.3e-114 416.8 484 51.2
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 6.6e-114 415.2 470 53.2
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-113 414.1 469 52.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.9e-113 413.7 472 51.7
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.3e-113 412.9 475 50.9
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.8e-111 405.2 461 51.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 7.5e-110 401.7 438 53.0
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.2e-107 394.4 465 52.9
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 5.0e-106 389.0 445 52.1
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.5e-105 386.7 395 56.5
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.2e-104 384.4 550 43.6
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.8e-104 383.3 462 48.5
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.1e-103 381.3 482 49.4
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.8e-103 380.6 374 58.8
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 6.8e-103 378.6 459 47.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.2e-102 377.9 450 51.1
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.3e-101 374.4 522 46.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.9e-100 370.5 402 53.0
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 8.6e-98 361.7 386 52.8
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.1e-96 357.1 513 43.7
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.6e-96 356.3 397 54.9
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 8.3e-93 345.1 539 40.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.5e-91 339.7 274 65.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 6.0e-91 339.0 359 57.4
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 3.3e-89 333.2 396 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.3e-89 332.8 464 43.5
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.6e-89 332.4 508 42.3
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.2e-88 331.3 436 47.5
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 5.1e-82 309.3 411 48.2
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 2.4e-79 300.4 265 62.3
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 7.3e-73 278.9 847 29.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 6.2e-72 275.8 449 43.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 8.1e-72 275.4 264 59.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 5.4e-68 262.7 175 75.4
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.5e-60 237.3 363 44.1
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.3e-58 230.7 134 82.8
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-58 228.8 627 31.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 9.6e-57 225.3 226 53.1
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.3e-53 214.9 133 75.9
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.8e-50 204.5 466 32.4
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.3e-49 200.3 455 30.5
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 7.4e-49 199.1 275 45.5
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.2e-38 165.2 282 38.3
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.0e-37 162.2 344 33.7
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-29 134.0 85 75.3
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.5e-28 129.8 291 33.7
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 6.3e-24 116.3 66 81.8
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 9.1e-23 112.5 62 83.9
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 4.5e-14 83.6 69 52.2
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.1e-12 79.0 47 78.7
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 5.5e-12 76.6 42 88.1
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.4e-10 72.0 57 57.9
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-10 71.6 95 45.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 5.2e-10 70.1 74 51.4
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.4e-09 67.4 50 64.0
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 1.7e-08 65.1 43 69.8
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 2.7e-06 57.8 44 65.9


User provided reference genes

Program Settings