Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 6.9e-90 334.0 168 100.0
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 2.1e-75 285.8 168 88.1
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.1e-75 285.8 168 88.1
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 6.2e-75 284.3 168 87.5
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.4e-74 283.1 168 87.5
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 3.4e-73 278.5 168 85.1
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 3.4e-73 278.5 168 84.5
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 1.7e-72 276.2 168 83.9
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 1.4e-71 273.1 168 82.1
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 3.2e-71 271.9 168 81.5
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 4.2e-71 271.6 168 81.5
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 5.5e-71 271.2 168 81.5
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 7.1e-71 270.8 168 81.0
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 9.3e-71 270.4 168 80.4
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 9.3e-71 270.4 168 81.0
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 9.3e-71 270.4 167 81.4
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.6e-70 269.6 168 81.5
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 1.6e-70 269.6 168 82.1
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-70 269.2 168 80.4
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 6.0e-70 267.7 168 80.4
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 6.0e-70 267.7 168 81.0
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 6.0e-70 267.7 168 78.6
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 1.3e-69 266.5 168 79.2
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 3.0e-69 265.4 168 78.6
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.0e-69 265.4 168 78.6
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 3.9e-69 265.0 168 79.2
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 3.9e-69 265.0 168 79.8
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 5.1e-69 264.6 168 79.2
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 5.1e-69 264.6 168 79.2
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 5.1e-69 264.6 168 78.6
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 6.7e-69 264.2 168 78.6
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 8.7e-69 263.8 166 78.9
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 8.7e-69 263.8 168 78.6
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.1e-68 263.5 166 78.9
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.5e-68 263.1 168 78.6
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 1.5e-68 263.1 168 78.6
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.5e-68 263.1 168 78.6
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.9e-68 262.7 168 79.8
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 1.9e-68 262.7 168 79.2
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 2.5e-68 262.3 168 78.6
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 2.5e-68 262.3 168 79.8
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 2.5e-68 262.3 168 78.0
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.3e-68 261.9 168 79.2
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 3.3e-68 261.9 168 79.8
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 3.3e-68 261.9 168 79.8
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 4.3e-68 261.5 168 78.6
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 5.7e-68 261.2 168 78.0
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 9.6e-68 260.4 168 79.2
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 9.6e-68 260.4 168 78.6
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 9.6e-68 260.4 168 78.0
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 2.8e-67 258.8 168 78.6
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.7e-67 258.5 166 77.1
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.7e-67 258.5 166 77.7
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 3.7e-67 258.5 168 77.4
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 6.3e-67 257.7 166 78.3
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 8.2e-67 257.3 166 78.3
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 8.2e-67 257.3 168 78.0
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.4e-66 256.5 168 78.0
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 1.8e-66 256.1 168 77.4
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 2.4e-66 255.8 166 75.3
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.4e-66 255.8 168 75.6
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 2.4e-66 255.8 168 75.6
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 2.4e-66 255.8 168 75.0
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 73.8
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 3.1e-66 255.4 168 75.0
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 5.3e-66 254.6 166 74.7
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 5.3e-66 254.6 166 74.7
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 5.3e-66 254.6 166 77.7
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-65 253.4 168 74.4
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 1.2e-65 253.4 168 74.4
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 1.5e-65 253.1 167 75.4
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.6e-65 252.3 168 74.4
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 3.4e-65 251.9 168 73.2
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 1.3e-64 250.0 168 75.6
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 1.3e-64 250.0 168 75.6
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.9e-64 248.8 168 75.0
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 3.8e-64 248.4 166 74.1
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 8.4e-64 247.3 168 72.6
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.4e-63 246.5 168 72.6
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.4e-63 246.5 168 73.8
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.2e-63 245.4 166 74.1
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.2e-63 245.4 159 78.6
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 4.2e-63 245.0 168 73.8
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 7.2e-63 244.2 168 72.6
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 7.2e-63 244.2 167 72.5
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.2e-62 243.4 168 73.2
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.2e-62 243.4 166 73.5
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 7.9e-62 240.7 150 80.0
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.1e-61 238.0 124 93.5
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.1e-61 238.0 124 93.5
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 2.5e-60 235.7 178 66.9
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.3e-60 235.3 123 93.5
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.3e-59 233.4 132 86.4
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.6e-59 233.0 168 67.3
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 2.8e-59 232.3 153 74.5
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 4.8e-59 231.5 160 73.1
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.8e-58 229.6 132 87.1
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.4e-58 229.2 124 88.7
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 9.0e-58 227.3 164 68.3
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.2e-57 226.9 122 92.6
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 4.5e-57 224.9 149 74.5
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 4.5e-57 224.9 124 86.3
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 5.9e-57 224.6 164 67.1
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.0e-56 223.8 218 56.0
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.7e-56 223.0 155 71.0
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 5.5e-55 218.0 124 83.9
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 2.3e-53 212.6 124 79.0
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 3.0e-53 212.2 168 63.7
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 5.1e-53 211.5 150 74.0
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 8.8e-53 210.7 166 63.9
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 1.7e-51 206.5 166 62.0
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.2e-51 206.1 150 69.3
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 7.7e-49 197.6 141 70.2
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 3.2e-47 192.2 166 57.2
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 4.2e-47 191.8 118 78.8
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.1e-46 189.5 168 58.3
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 4.4e-44 181.8 165 55.8
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 1.1e-42 177.2 111 78.4
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 4.5e-41 171.8 166 48.8
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.1e-39 167.2 119 71.4
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.5e-39 164.9 119 70.6
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 6.1e-38 161.4 168 56.0
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 2.3e-37 159.5 168 55.4
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.8e-37 157.5 168 55.4
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 2.4e-34 149.4 82 89.0
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 5.9e-33 144.8 163 47.9
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 6.5e-32 141.4 196 46.4
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.3e-29 132.9 104 65.4
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.0e-28 129.8 109 62.4
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.9e-25 118.2 86 68.6
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 7.2e-23 111.3 65 86.2
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 3.6e-22 109.0 58 87.9
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 2.6e-20 102.8 60 81.7
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 9.8e-20 100.9 128 50.8
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.2e-19 99.8 63 73.0
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.8e-19 99.4 63 76.2
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 2.9e-16 89.4 46 89.1
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.1e-15 87.4 50 84.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 2.3e-13 79.7 172 30.8
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 5.2e-13 78.6 160 30.6
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 7.5e-12 74.7 127 34.6
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 1.6e-09 67.0 64 57.8


User provided reference genes

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