Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.2e-128 463.8 345 100.0
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 8.5e-119 431.0 349 94.3
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.9e-118 429.9 349 94.6
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.5e-118 429.5 346 85.3
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.2e-118 428.7 345 89.6
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 8.5e-111 404.4 349 87.1
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 7.7e-88 328.2 362 75.4
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 1.1e-86 324.3 344 72.7
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 3.3e-78 296.2 359 68.5
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 4.9e-66 255.8 346 65.9
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 7.8e-64 248.4 343 58.9
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.7e-63 247.3 343 58.6
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 6.6e-63 245.4 343 66.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 3.3e-62 243.0 341 64.5
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.6e-61 240.7 351 59.5
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 2.1e-61 240.4 344 48.0
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 2.8e-61 240.0 342 59.9
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 4.7e-61 239.2 341 57.2
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 6.2e-61 238.8 361 59.0
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 1.4e-60 237.7 349 64.8
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 3.1e-60 236.5 339 61.1
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 4.0e-60 236.1 340 59.7
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 6.8e-60 235.3 379 61.7
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 8.9e-60 235.0 364 65.1
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 1.5e-59 234.2 343 66.5
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.0e-59 233.8 341 55.1
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 2.0e-59 233.8 344 64.8
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 2.6e-59 233.4 364 63.5
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 4.4e-59 232.6 341 53.1
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 5.8e-59 232.3 341 61.6
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 1.4e-57 227.6 350 64.6
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 2.4e-57 226.9 342 69.3
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.4e-57 226.9 367 57.8
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 4.1e-57 226.1 361 65.1
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 7.1e-57 225.3 354 69.8
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.6e-56 224.2 341 57.5
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 2.1e-56 223.8 341 45.2
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 3.5e-56 223.0 345 50.4
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 3.5e-56 223.0 345 56.2
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 6.0e-56 222.2 366 64.8
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 7.8e-56 221.9 363 66.4
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 7.8e-56 221.9 341 62.5
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 1.7e-55 220.7 357 58.3
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 3.0e-55 219.9 345 62.0
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 3.0e-55 219.9 345 62.0
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 3.9e-55 219.5 359 60.2
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 6.6e-55 218.8 346 57.8
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 8.6e-55 218.4 346 54.3
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 8.6e-55 218.4 346 46.0
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 8.6e-55 218.4 343 66.8
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.1e-54 218.0 366 61.2
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 9.5e-54 214.9 346 56.4
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 1.2e-53 214.5 359 55.4
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 2.8e-53 213.4 351 63.0
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 2.8e-53 213.4 344 59.3
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 3.6e-53 213.0 346 54.3
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 6.2e-53 212.2 346 54.6
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 6.2e-53 212.2 346 45.1
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 6.2e-53 212.2 359 61.6
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 6.2e-53 212.2 370 62.7
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 1.8e-52 210.7 346 52.6
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 1.8e-52 210.7 346 52.6
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 2.4e-52 210.3 352 67.6
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 8.9e-52 208.4 362 58.6
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 2.0e-51 207.2 372 60.8
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 4.4e-51 206.1 348 58.9
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 7.6e-51 205.3 344 53.5
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 1.7e-50 204.1 349 55.6
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 2.2e-50 203.8 351 59.3
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 2.2e-50 203.8 342 54.1
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 1.4e-49 201.1 365 60.0
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 1.9e-49 200.7 344 56.1
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.4e-49 200.3 347 57.9
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 7.1e-49 198.7 346 56.4
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 4.6e-48 196.1 371 60.6
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 4.6e-48 196.1 345 56.5
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 7.8e-48 195.3 394 53.3
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 5.1e-47 192.6 344 56.7
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 6.6e-47 192.2 378 60.1
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.5e-46 191.0 389 55.8
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 9.6e-46 188.3 362 42.3
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.1e-44 183.3 172 63.4
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 4.4e-43 179.5 344 48.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 6.4e-42 175.6 293 58.0
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 1.9e-41 174.1 395 58.7
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 7.1e-41 172.2 335 55.5
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 4.8e-37 159.5 341 39.6
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.8e-36 157.5 348 52.0
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 3.1e-36 156.8 346 44.8
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 4.0e-36 156.4 270 66.7
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 3.4e-35 153.3 353 50.7
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 4.9e-34 149.4 206 48.5
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 3.5e-32 143.3 378 49.2
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.6e-32 142.9 140 57.1
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 4.6e-32 142.9 285 64.2
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 1.3e-31 141.4 152 52.6
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 7.4e-30 135.6 116 62.1
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.8e-29 133.7 251 56.2
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 6.9e-28 129.0 145 51.7
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.7e-26 124.4 119 55.5
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 3.5e-24 116.7 291 52.9
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 5.1e-23 112.8 196 40.3
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 3.7e-21 106.7 119 49.6
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 9.0e-20 102.1 164 43.3
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 2.0e-19 100.9 164 37.8
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 4.5e-19 99.8 86 68.6
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 1.9e-17 94.4 360 37.5
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.9e-17 94.4 95 53.7
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 3.2e-17 93.6 188 35.1
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 5.5e-17 92.8 162 38.3
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 2.7e-16 90.5 93 58.1
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 7.9e-16 89.0 79 65.8
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.3e-15 88.2 102 51.0
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 8.7e-15 85.5 87 52.9
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.5e-14 84.7 87 59.8
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 9.7e-14 82.0 77 62.3
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-10 71.6 115 40.9
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-09 68.6 114 43.9
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 3.2e-09 67.0 110 43.6
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.2e-09 66.6 110 43.6
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.6e-08 63.5 75 49.3
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 4.6e-08 63.2 73 50.7
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 4.6e-08 63.2 104 41.3
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 6.1e-08 62.8 38 73.7
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-07 61.6 114 41.2
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 5.1e-07 59.7 70 50.0
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 4.3e-06 56.6 106 38.7


User provided reference genes

Program Settings