Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 9.7e-68 260.0 130 100.0
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 4.1e-34 148.3 77 97.4
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 2.1e-33 146.0 77 96.1
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 8.6e-32 140.6 128 64.1
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 5.4e-26 121.3 77 79.2
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 1.8e-21 106.3 78 70.5
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 4.0e-21 105.1 77 68.8
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 8.9e-21 104.0 84 67.9
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.5e-20 103.2 77 67.5
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 3.4e-20 102.1 76 69.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 7.6e-20 100.9 77 68.8
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 7.6e-20 100.9 77 68.8
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 9.9e-20 100.5 77 67.5
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.3e-19 100.1 77 66.2
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.3e-19 100.1 77 66.2
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 2.2e-19 99.4 80 67.5
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 2.9e-19 99.0 77 62.3
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 4.9e-19 98.2 77 67.5
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 4.9e-19 98.2 82 61.0
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 6.4e-19 97.8 80 63.8
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.1e-18 97.1 77 66.2
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.1e-18 97.1 77 66.2
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.4e-18 96.7 74 67.6
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.9e-18 96.3 77 64.9
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.9e-18 96.3 61 77.0
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 1.9e-18 96.3 79 64.6
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.9e-18 96.3 77 66.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 2.4e-18 95.9 82 62.2
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.4e-18 95.9 77 64.9
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 2.4e-18 95.9 77 64.9
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.4e-18 95.9 79 67.1
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 3.2e-18 95.5 79 64.6
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.2e-18 95.5 61 75.4
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 3.2e-18 95.5 80 66.2
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 5.4e-18 94.7 78 64.1
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 7.1e-18 94.4 86 59.3
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 7.1e-18 94.4 56 80.4
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 7.1e-18 94.4 77 64.9
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 9.2e-18 94.0 77 63.6
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 9.2e-18 94.0 82 58.5
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.2e-17 93.6 82 61.0
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.2e-17 93.6 78 61.5
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.6e-17 93.2 78 61.5
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 2.1e-17 92.8 90 58.9
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.1e-17 92.8 80 60.0
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 2.7e-17 92.4 80 65.0
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.5e-17 92.0 81 61.7
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 3.5e-17 92.0 80 65.0
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 6.0e-17 91.3 53 83.0
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 6.0e-17 91.3 77 61.0
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 6.0e-17 91.3 81 61.7
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 6.0e-17 91.3 65 69.2
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 6.0e-17 91.3 83 57.8
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 6.0e-17 91.3 81 60.5
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 7.8e-17 90.9 54 79.6
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.0e-16 90.5 77 62.3
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 1.3e-16 90.1 76 64.5
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 2.3e-16 89.4 80 60.0
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 2.3e-16 89.4 76 61.8
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 3.0e-16 89.0 78 62.8
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 5.1e-16 88.2 76 61.8
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 5.1e-16 88.2 81 64.2
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 6.6e-16 87.8 80 65.0
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 1.1e-15 87.0 84 60.7
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.5e-15 86.7 64 64.1
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 2.5e-15 85.9 79 57.0
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 2.5e-15 85.9 76 57.9
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 4.3e-15 85.1 58 67.2
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 7.3e-15 84.3 74 59.5
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 7.3e-15 84.3 74 59.5
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 7.3e-15 84.3 74 59.5
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 7.3e-15 84.3 101 51.5
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 9.6e-15 84.0 77 59.7
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 1.3e-14 83.6 56 73.2
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.6e-14 83.2 51 76.5
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.1e-14 82.8 77 58.4
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 2.8e-14 82.4 74 58.1
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 3.6e-14 82.0 66 63.6
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 3.6e-14 82.0 77 59.7
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 1.4e-13 80.1 59 66.1
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 1.4e-13 80.1 57 66.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 2.4e-13 79.3 66 60.6
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 2.0e-12 76.3 69 56.5
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 2.0e-12 76.3 59 62.7
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 2.6e-12 75.9 74 51.4
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 6.4e-11 71.2 122 41.8
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 1.9e-10 69.7 46 76.1
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 5.4e-10 68.2 114 41.2
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 7.1e-10 67.8 58 58.6
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 6.0e-09 64.7 35 88.6
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 7.8e-09 64.3 79 50.6
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 1.6e-06 56.6 45 60.0


User provided reference genes

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