Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.1e-66 255.0 129 100.0
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 8.5e-64 246.9 128 97.7
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.5e-64 246.9 128 97.7
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.5e-64 246.9 128 97.7
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.7e-62 241.9 128 96.1
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 4.5e-57 224.6 130 90.8
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.8e-34 149.4 130 63.8
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.2e-30 136.7 129 59.7
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 6.1e-30 134.4 129 57.4
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 4.0e-29 131.7 129 57.4
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 5.2e-29 131.3 128 65.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.2e-28 130.2 129 56.6
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 4.4e-28 128.3 129 56.6
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 1.7e-27 126.3 129 56.6
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.4e-26 122.5 129 55.8
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.7e-25 119.0 134 54.5
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 3.5e-25 118.6 106 63.2
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 4.5e-25 118.2 132 52.3
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.0e-24 117.1 133 55.6
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.7e-24 116.3 128 52.3
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.7e-24 116.3 128 51.6
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.7e-24 116.3 123 57.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.7e-24 116.3 81 70.4
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 2.3e-24 115.9 130 55.4
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 8.6e-24 114.0 130 51.5
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 8.6e-24 114.0 114 55.3
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 1.1e-23 113.6 114 53.5
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 3.3e-23 112.1 129 49.6
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 4.3e-23 111.7 81 66.7
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 7.3e-23 110.9 120 52.5
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 9.5e-23 110.5 112 54.5
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 9.5e-23 110.5 79 69.6
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 9.5e-23 110.5 130 52.3
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 2.1e-22 109.4 122 56.6
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.7e-22 108.2 130 52.3
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 6.1e-22 107.8 73 75.3
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 1.8e-21 106.3 113 54.0
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 2.3e-21 105.9 119 54.6
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 5.2e-21 104.8 79 69.6
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 5.2e-21 104.8 71 77.5
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 8.9e-21 104.0 80 66.2
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.2e-20 103.6 79 64.6
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.2e-20 103.6 91 60.4
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.2e-20 103.6 81 65.4
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.5e-20 103.2 97 59.8
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.0e-20 102.8 100 55.0
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 2.6e-20 102.4 81 65.4
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 2.6e-20 102.4 78 64.1
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.6e-20 102.4 82 69.5
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 3.4e-20 102.1 138 49.3
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 3.4e-20 102.1 129 48.1
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 5.7e-20 101.3 82 63.4
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 7.5e-20 100.9 80 68.8
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 7.5e-20 100.9 82 65.9
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 2.2e-19 99.4 73 71.2
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.2e-19 99.4 90 61.1
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 2.9e-19 99.0 119 50.4
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.7e-19 98.6 71 69.0
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 3.7e-19 98.6 83 63.9
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 8.3e-19 97.4 125 49.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.4e-18 96.7 96 53.1
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.4e-18 96.7 128 48.4
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 4.1e-18 95.1 92 52.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 7.0e-18 94.4 83 57.8
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 9.2e-18 94.0 93 53.8
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 1.6e-17 93.2 113 46.9
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 3.5e-17 92.0 88 53.4
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 3.5e-17 92.0 88 53.4
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 4.6e-17 91.7 92 51.1
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 7.8e-17 90.9 73 65.8
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 1.3e-16 90.1 143 43.4
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 1.3e-16 90.1 143 43.4
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 1.3e-16 90.1 78 59.0
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 1.3e-16 90.1 82 58.5
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 1.7e-16 89.7 59 72.9
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 1.7e-16 89.7 82 61.0
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.7e-16 89.7 79 57.0
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 3.9e-16 88.6 80 58.8
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 5.0e-16 88.2 141 43.3
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.5e-15 85.9 59 71.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 9.5e-15 84.0 72 58.3
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 1.6e-14 83.2 94 53.2
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.6e-14 83.2 83 54.2
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 2.1e-14 82.8 84 53.6
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 6.2e-14 81.3 58 65.5
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 6.2e-14 81.3 73 58.9
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.4e-13 80.1 60 65.0
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 1.2e-12 77.0 131 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.2e-12 77.0 58 62.1
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 1.7e-11 73.2 130 40.8
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 6.4e-11 71.2 62 64.5
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 9.2e-10 67.4 78 48.7
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 9.2e-10 67.4 75 45.3
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 2.7e-09 65.9 82 47.6
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 4.6e-09 65.1 45 73.3
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 9.5e-07 57.4 30 90.0
Haze_08097 Corylus avellana HOM05D001237 ORTHO05D009110 2.1e-06 56.2 88 43.2
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 8.1e-06 54.3 53 45.3


User provided reference genes

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