Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2926.0 1462 100.0
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2872.0 1503 96.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 2779.2 1503 93.3
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2714.5 1607 86.7
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2671.0 1599 86.1
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 2526.9 1492 86.2
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 2233.4 1478 77.1
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 2201.0 1527 74.5
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1954.9 1530 66.5
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1943.7 1533 66.1
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1892.9 1534 64.9
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1869.4 1529 63.4
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1836.2 1563 62.1
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1830.5 1557 62.7
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1801.9 1521 62.2
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1793.1 1525 61.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1781.9 1527 61.5
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1781.1 1532 61.7
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1781.1 1542 60.8
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1771.1 1525 61.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1766.9 1527 61.4
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1751.1 1527 60.8
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1746.5 1554 59.9
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1745.7 1529 60.3
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1703.0 1556 57.9
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1692.6 1499 61.0
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1619.4 1515 56.8
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1611.7 1515 56.8
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1608.2 1529 56.4
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1604.7 1533 56.2
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1599.3 1530 56.1
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1592.4 1414 59.7
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1590.5 1545 54.8
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1589.3 1515 55.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1588.5 1515 56.0
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1585.1 1519 55.6
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1580.1 1521 55.4
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1576.6 1528 55.4
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1570.4 1521 55.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1570.1 1515 55.6
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1561.2 1522 54.1
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1557.7 1550 55.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1555.8 1519 54.1
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1554.3 1519 55.4
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1551.6 1528 54.3
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1540.4 1522 54.5
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1533.9 1510 54.7
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1530.4 1510 55.0
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1514.2 1361 59.6
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1505.7 1542 53.0
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1505.3 1539 52.8
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1503.4 1516 53.2
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1496.5 1540 53.6
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1482.6 1547 52.6
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1481.5 1524 53.1
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1479.5 1516 53.1
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1477.2 1529 52.4
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1470.3 1518 53.0
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1469.1 1512 52.9
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1468.8 1515 52.5
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1466.8 1540 51.4
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1461.4 1542 52.7
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1459.9 1517 52.6
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1458.0 1574 52.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1457.2 1534 51.9
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1456.8 1551 51.3
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1453.3 1515 52.2
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1453.3 1515 52.2
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1451.8 1551 51.5
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1450.3 1548 52.1
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1443.3 1499 51.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1442.2 1577 51.0
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1441.8 1534 51.6
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1437.2 1516 52.2
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1427.2 1528 51.7
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1422.5 1581 50.8
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1491 52.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1402.5 1539 50.9
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1402.5 1545 51.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1397.5 1400 53.8
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1391.3 1512 50.3
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1390.6 1541 50.9
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1535 51.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1379.0 1517 51.0
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1365.1 1519 49.5
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1353.6 1345 54.9
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1301.6 1372 53.3
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1297.7 1313 54.5
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1296.2 1598 46.5
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1270.8 1432 49.6
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1194.1 1557 44.3
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1185.2 1538 46.0
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1145.2 990 59.4
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1134.4 1135 54.9
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1104.0 1546 42.7
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 6.4e-309 1064.7 1109 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 9.4e-244 848.2 1635 34.9
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.5e-225 787.7 904 48.9
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 3.0e-173 614.0 1507 30.7
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.4e-164 582.8 498 65.5
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.2e-158 565.5 497 62.8
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.1e-158 564.7 1041 35.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.8e-146 525.0 687 42.6
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-124 451.8 392 59.2
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.0e-96 358.2 196 91.3
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.8e-76 290.8 607 32.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-47 195.7 163 68.7
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 7.9e-41 174.1 107 73.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 6.7e-32 144.4 91 70.3
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.1e-25 122.9 80 73.8
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.9e-25 120.9 98 60.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 3.7e-22 112.1 89 58.4
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 5.3e-21 108.2 67 79.1
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.7e-19 103.2 87 56.3
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.7e-19 103.2 87 56.3
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.2e-18 97.8 67 77.6
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.5e-11 74.7 74 54.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.3e-06 60.5 42 66.7


User provided reference genes

Program Settings