Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1884.0 963 100.0
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1798.1 964 93.0
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1790.0 964 92.9
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1756.1 1042 86.0
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1751.9 1011 89.9
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1738.0 963 90.9
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 1573.5 965 83.9
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1303.5 972 69.8
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1257.7 986 69.4
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1245.7 970 69.1
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 1.2e-300 1036.6 987 59.9
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 2.9e-294 1015.4 1013 57.6
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 2.0e-290 1002.7 978 57.3
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 4.1e-288 995.0 966 59.2
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 2.1e-284 982.6 979 56.7
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 7.3e-277 957.6 986 53.2
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 2.2e-265 919.5 931 56.6
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 4.9e-265 918.3 987 56.3
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 1.1e-264 917.1 927 54.7
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 3.5e-263 912.1 972 54.0
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.7e-260 901.7 982 53.3
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 3.1e-259 899.0 978 53.7
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 2.9e-257 892.5 968 53.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.4e-257 891.3 923 53.7
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.2e-256 889.0 970 52.4
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.1e-253 880.6 922 53.6
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 2.1e-252 876.3 970 52.4
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 3.6e-252 875.5 933 52.1
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 3.1e-251 872.5 950 51.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 4.0e-251 872.1 946 51.3
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 8.9e-251 870.9 979 51.8
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 4.9e-249 865.1 953 52.6
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 2.5e-245 852.8 1012 51.8
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.6e-244 850.1 978 51.0
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 5.3e-243 845.1 973 51.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 2.4e-240 836.3 958 51.1
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 2.7e-239 832.8 1009 49.9
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 1.0e-238 830.9 968 48.9
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 3.0e-238 829.3 901 54.7
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 9.6e-237 824.3 925 51.0
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.5e-234 817.0 945 50.3
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 1.1e-232 810.8 1000 47.5
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.2e-231 807.4 559 70.5
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.6e-231 807.0 988 49.3
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.1e-231 806.6 974 49.2
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 4.6e-231 805.4 964 50.1
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.0e-230 804.3 612 66.0
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 1.1e-227 794.3 972 48.5
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 3.1e-227 792.7 975 48.2
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.0e-225 787.7 936 48.7
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 4.9e-225 785.4 950 48.0
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.9e-224 783.5 912 49.2
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 4.2e-224 782.3 949 47.5
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 7.1e-224 781.6 953 48.9
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.0e-222 777.7 554 68.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 1.0e-222 777.7 957 48.3
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 5.8e-218 761.9 982 45.5
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 9.3e-216 754.6 958 47.6
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 6.1e-215 751.9 958 46.9
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.1e-213 747.7 937 47.1
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 7.4e-213 745.0 1010 45.7
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.6e-212 743.8 899 47.8
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 8.5e-209 731.5 919 47.7
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 2.5e-208 729.9 911 46.9
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 5.5e-208 728.8 973 44.9
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.6e-207 727.2 846 50.0
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 6.1e-207 725.3 928 45.7
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 7.9e-207 724.9 946 45.9
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.0e-206 724.5 974 45.5
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 1.8e-206 723.8 949 45.3
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 3.0e-206 723.0 965 44.7
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 1.7e-204 717.2 942 45.3
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 4.8e-204 715.7 945 45.3
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 1.1e-203 714.5 883 46.2
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 2.4e-203 713.4 875 47.4
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 3.1e-203 713.0 875 46.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 6.9e-203 711.8 951 44.2
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.3e-201 707.6 932 45.1
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 2.2e-201 706.8 927 46.1
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.4e-200 704.1 930 45.2
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.9e-200 703.7 994 45.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 1.9e-200 703.7 755 53.2
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.6e-199 700.7 988 43.5
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 4.7e-199 699.1 557 62.1
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 3.0e-198 696.4 958 43.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 8.8e-198 694.9 953 43.8
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 5.7e-197 692.2 927 44.6
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 8.2e-196 688.3 923 45.2
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.0e-193 681.4 871 46.2
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 2.3e-190 670.2 943 45.7
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 3.0e-190 669.8 928 44.8
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 5.2e-190 669.1 871 45.8
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.3e-188 664.5 781 48.3
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 6.3e-188 662.1 890 44.6
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 7.0e-187 658.7 944 42.7
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 3.5e-178 629.8 944 41.5
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.1e-176 624.8 918 43.7
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 3.6e-175 619.8 579 53.4
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 6.3e-172 609.0 848 43.5
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 5.0e-169 599.4 913 42.3
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.7e-148 530.0 509 55.0
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 5.4e-139 499.6 773 41.9
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 7.3e-136 489.2 925 36.9
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 7.3e-136 489.2 414 58.0
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 5.1e-129 466.5 316 70.9
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.1e-127 461.1 739 37.6
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.8e-125 453.0 692 42.8
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 2.4e-123 447.6 673 42.3
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 5.4e-123 446.4 549 45.0
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 4.6e-122 443.4 550 44.2
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.7e-121 441.4 518 43.8
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.9e-118 429.5 820 37.3
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 2.9e-116 424.1 513 45.6
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 6.1e-90 336.7 636 39.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 4.1e-78 297.4 228 68.4
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.6e-69 268.9 222 61.7
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.0e-65 256.1 597 33.5
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.0e-60 239.6 566 35.0
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.5e-35 155.2 272 35.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.4e-22 110.9 80 70.0
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.1e-18 99.0 196 32.1
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 6.4e-15 87.4 98 43.9
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 2.4e-14 85.5 101 44.6
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.2e-14 85.1 173 37.0
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 3.2e-14 85.1 57 64.9
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 4.2e-14 84.7 411 25.5
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 9.3e-14 83.6 68 58.8
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.6e-13 82.8 51 70.6
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 1.3e-12 79.7 151 42.4
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.0e-12 78.6 55 61.8
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 4.0e-09 68.2 194 35.1


User provided reference genes

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