Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-73 278.9 144 100.0
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.5e-72 274.2 144 97.9
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.3e-68 263.1 144 94.4
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.0e-62 241.5 186 73.1
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 3.1e-59 231.9 183 71.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 8.6e-57 223.8 141 83.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.5e-53 213.0 142 78.9
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 7.0e-51 204.1 141 75.9
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 8.6e-49 197.2 142 75.4
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 1.1e-43 180.3 143 69.2
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.6e-42 176.4 139 68.3
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.3e-41 172.6 138 68.8
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 6.6e-41 171.0 126 72.2
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.3e-40 168.7 143 65.0
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.6e-39 166.4 127 70.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.6e-39 166.4 130 73.1
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.6e-39 165.2 141 63.8
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.1e-38 163.7 142 64.8
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.4e-38 163.3 141 66.0
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.0e-37 159.5 134 62.7
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 5.8e-37 157.9 136 66.2
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 7.5e-37 157.5 141 63.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.2e-36 156.0 133 63.2
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 6.4e-36 154.5 130 63.1
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 3.2e-35 152.1 128 63.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.2e-34 150.2 123 65.9
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 4.6e-34 148.3 127 61.4
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.7e-33 146.4 128 60.9
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.7e-33 146.4 134 61.9
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.7e-33 146.4 99 77.8
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.7e-33 146.4 125 64.0
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.7e-33 146.4 113 69.0
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.0e-33 145.6 129 62.8
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.0e-33 145.6 148 59.5
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 3.9e-33 145.2 129 62.8
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 3.9e-33 145.2 110 71.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 5.1e-33 144.8 143 61.5
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 8.6e-33 144.1 101 68.3
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.9e-32 142.9 101 65.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.9e-32 142.9 128 62.5
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.9e-32 142.9 128 58.6
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-32 142.9 130 59.2
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-32 142.9 130 59.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.5e-32 142.5 127 62.2
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 3.3e-32 142.1 130 60.8
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 3.3e-32 142.1 130 60.8
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 4.3e-32 141.7 128 58.6
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 5.6e-32 141.4 103 68.9
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.2e-31 140.2 99 69.7
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.2e-31 140.2 97 72.2
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.2e-31 140.2 97 72.2
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.2e-31 140.2 97 72.2
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.1e-31 139.4 125 63.2
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 2.1e-31 139.4 92 76.1
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.1e-31 139.4 135 61.5
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.1e-31 139.4 120 67.5
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 2.8e-31 139.0 91 74.7
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.8e-31 139.0 128 60.9
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.8e-31 139.0 143 55.9
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 4.7e-31 138.3 99 66.7
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 6.2e-31 137.9 137 60.6
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 6.2e-31 137.9 142 56.3
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 8.1e-31 137.5 142 59.2
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.1e-30 137.1 104 70.2
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.8e-30 136.3 139 56.1
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.4e-30 136.0 144 58.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.4e-30 136.0 90 72.2
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 4.0e-30 135.2 127 60.6
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 4.0e-30 135.2 127 60.6
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 4.0e-30 135.2 100 68.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 5.2e-30 134.8 121 60.3
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 6.8e-30 134.4 127 59.8
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 6.8e-30 134.4 127 59.8
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 6.8e-30 134.4 131 57.3
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 6.8e-30 134.4 136 57.4
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 8.9e-30 134.0 104 68.3
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 1.5e-29 133.3 117 63.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.5e-29 133.3 127 60.6
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.0e-29 132.9 99 68.7
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.6e-29 132.5 135 58.5
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 2.6e-29 132.5 98 67.3
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 3.4e-29 132.1 89 74.2
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 3.4e-29 132.1 140 55.7
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.8e-29 131.3 127 58.3
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 5.8e-29 131.3 142 55.6
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 7.6e-29 131.0 99 67.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-28 130.2 103 67.0
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.7e-28 129.8 127 59.8
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.7e-28 129.8 127 59.8
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.7e-28 129.8 127 59.8
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.9e-28 128.3 113 60.2
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.4e-27 126.7 87 71.3
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.9e-27 126.3 87 70.1
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-27 125.6 90 71.1
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.2e-27 125.6 90 71.1
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 7.1e-27 124.4 140 47.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 3.5e-26 122.1 120 58.3
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 4.6e-26 121.7 87 69.0
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 3.0e-25 119.0 81 70.4
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 3.9e-25 118.6 87 66.7
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.5e-24 115.9 118 56.8
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 5.6e-24 114.8 84 64.3
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 9.6e-24 114.0 76 71.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 2.1e-23 112.8 87 62.1
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 6.2e-23 111.3 77 70.1
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-22 110.2 112 57.1
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.8e-22 109.8 145 44.8
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 1.8e-22 109.8 132 47.0
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 3.1e-22 109.0 86 64.0
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 1.2e-21 107.1 102 56.9
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.5e-21 106.7 109 57.8
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.6e-21 105.9 112 50.9
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 4.2e-19 98.6 86 54.7
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 9.3e-19 97.4 108 54.6
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.3e-17 93.6 67 71.6
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 2.3e-17 92.8 81 55.6
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 2.3e-17 92.8 66 69.7
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.9e-17 92.0 66 77.3
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 7.3e-16 87.8 109 53.2
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-15 85.9 59 71.2
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 3.6e-15 85.5 76 61.8
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 8.1e-15 84.3 46 84.8
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.8e-14 83.2 92 54.3
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.8e-14 83.2 92 54.3
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 5.3e-14 81.6 73 54.8
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 5.3e-14 81.6 73 54.8
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 6.9e-14 81.3 92 53.3
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 2.6e-13 79.3 92 52.2
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.7e-12 76.6 48 72.9
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 3.2e-11 72.4 68 57.4
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.2e-10 70.5 82 53.7
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 3.0e-09 65.9 115 41.7
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 3.3e-08 62.4 79 50.6
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 2.8e-07 59.3 31 83.9
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 2.8e-07 59.3 31 83.9
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.8e-07 59.3 81 48.1
Sabra05G0164800 Salix brachista HOM05D005411 ORTHO05D006463 3.7e-07 58.9 110 42.7
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 1.1e-06 57.4 58 51.7
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 1.4e-06 57.0 67 49.3
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.4e-06 56.2 42 73.8
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 4.0e-06 55.5 46 58.7


User provided reference genes

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